27 items (Cladophialophora immunda) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV07_07679	DNA mismatch repair protein msh-2; Component of the post-replicative DNA mismatch repair system (MMR). (938 aa)
	PV07_08462	Uncharacterized protein. (1067 aa)
	PV07_08940	Uncharacterized protein. (739 aa)
	PV07_08541	Vezatin domain-containing protein. (591 aa)
	PV07_10588	Uncharacterized protein. (1034 aa)
	PV07_10557	Zn(2)-C6 fungal-type domain-containing protein. (795 aa)
	PV07_10555	Zn(2)-C6 fungal-type domain-containing protein. (853 aa)
	PV07_04497	Fungal_trans domain-containing protein. (546 aa)
	PV07_04515	Uncharacterized protein. (1135 aa)
	PV07_01115	DNA_mis_repair domain-containing protein. (780 aa)
	PV07_01356	DNA_MISMATCH_REPAIR_2 domain-containing protein. (953 aa)
	PV07_06266	Fungal_trans domain-containing protein. (644 aa)
	PV07_05536	Fungal_trans domain-containing protein. (826 aa)
	PV07_04683	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (339 aa)
	PV07_11188	DNA_mis_repair domain-containing protein. (920 aa)
	PV07_04150	Fungal_trans domain-containing protein. (374 aa)
	PV07_03301	Uncharacterized protein. (378 aa)
	PV07_06397	MutL_C domain-containing protein. (897 aa)
	PV07_05483	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1221 aa)
	PV07_07540	Uncharacterized protein. (751 aa)
	PV07_06577	Fungal_trans domain-containing protein. (686 aa)
	PV07_04151	Fungal_trans domain-containing protein. (453 aa)
	PV07_04568	DNA_MISMATCH_REPAIR_2 domain-containing protein. (1007 aa)
	PV07_08539	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (259 aa)
	PV07_05865	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1098 aa)
	PV07_05539	Fungal_trans domain-containing protein. (698 aa)
	PV07_05529	Zn(2)-C6 fungal-type domain-containing protein. (853 aa)

Your Current Organism:

Cladophialophora immunda

NCBI taxonomy Id: 569365
Other names: C. immunda, CBS 834.96, Cladophialophora sp. CBS 834.96, Cladophialophora sp. HB-2008

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV07_01115	PV07_01356	A0A0D2A1U9	A0A0D2A2S0	DNA_mis_repair domain-containing protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein.	0.918
PV07_01115	PV07_03301	A0A0D2A1U9	A0A0D2D7I0	DNA_mis_repair domain-containing protein.	Uncharacterized protein.	0.549
PV07_01115	PV07_04150	A0A0D2A1U9	A0A0D2DA90	DNA_mis_repair domain-containing protein.	Fungal_trans domain-containing protein.	0.893
PV07_01115	PV07_04151	A0A0D2A1U9	A0A0D2CRP6	DNA_mis_repair domain-containing protein.	Fungal_trans domain-containing protein.	0.893
PV07_01115	PV07_04497	A0A0D2A1U9	A0A0D2B621	DNA_mis_repair domain-containing protein.	Fungal_trans domain-containing protein.	0.893
PV07_01115	PV07_04568	A0A0D2A1U9	A0A0D2CPE0	DNA_mis_repair domain-containing protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein.	0.987
PV07_01115	PV07_04683	A0A0D2A1U9	A0A0D2AU99	DNA_mis_repair domain-containing protein.	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.530
PV07_01115	PV07_05483	A0A0D2A1U9	A0A0D2D1Q8	DNA_mis_repair domain-containing protein.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.995
PV07_01115	PV07_05529	A0A0D2A1U9	A0A0D2CHT8	DNA_mis_repair domain-containing protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.893
PV07_01115	PV07_05536	A0A0D2A1U9	A0A0D2AWT9	DNA_mis_repair domain-containing protein.	Fungal_trans domain-containing protein.	0.893
PV07_01115	PV07_05539	A0A0D2A1U9	A0A0D2CHV0	DNA_mis_repair domain-containing protein.	Fungal_trans domain-containing protein.	0.893
PV07_01115	PV07_05865	A0A0D2A1U9	A0A0D2CJ15	DNA_mis_repair domain-containing protein.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.971
PV07_01115	PV07_06266	A0A0D2A1U9	A0A0D2AZ41	DNA_mis_repair domain-containing protein.	Fungal_trans domain-containing protein.	0.893
PV07_01115	PV07_06397	A0A0D2A1U9	A0A0D2D4R9	DNA_mis_repair domain-containing protein.	MutL_C domain-containing protein.	0.992
PV07_01115	PV07_06577	A0A0D2A1U9	A0A0D2CT35	DNA_mis_repair domain-containing protein.	Fungal_trans domain-containing protein.	0.893
PV07_01115	PV07_07540	A0A0D2A1U9	A0A0D2CVZ7	DNA_mis_repair domain-containing protein.	Uncharacterized protein.	0.989
PV07_01115	PV07_07679	A0A0D2A1U9	A0A0D2AS99	DNA_mis_repair domain-containing protein.	DNA mismatch repair protein msh-2; Component of the post-replicative DNA mismatch repair system (MMR).	0.996
PV07_01115	PV07_08539	A0A0D2A1U9	A0A0D2CP72	DNA_mis_repair domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.889
PV07_01115	PV07_08541	A0A0D2A1U9	A0A0D1ZC77	DNA_mis_repair domain-containing protein.	Vezatin domain-containing protein.	0.889
PV07_01115	PV07_08940	A0A0D2A1U9	A0A0D1ZDG1	DNA_mis_repair domain-containing protein.	Uncharacterized protein.	0.893