(46 nodes) Vesicle organization network (Cladophialophora immunda)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV07_12218	Arf-GAP domain-containing protein. (517 aa)
	PV07_00037	Uncharacterized protein. (635 aa)
	PV07_11453	t-SNARE coiled-coil homology domain-containing protein. (453 aa)
	PV07_11938	UBIQUITIN_CONJUGAT_2 domain-containing protein. (328 aa)
	PV07_09999	Uncharacterized protein. (217 aa)
	PV07_10796	t-SNARE coiled-coil homology domain-containing protein. (345 aa)
	PV07_08970	PI3K/PI4K domain-containing protein. (799 aa)
	PV07_06818	Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family. (1892 aa)
	PV07_03692	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. (225 aa)
	PV07_08900	Uncharacterized protein. (721 aa)
	PV07_00059	Uncharacterized protein. (506 aa)
	PV07_04401	Uncharacterized protein. (313 aa)
	PV07_02923	Uncharacterized protein. (366 aa)
	PV07_10098	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (351 aa)
	PV07_06283	t-SNARE coiled-coil homology domain-containing protein. (333 aa)
	PV07_06129	Uncharacterized protein. (601 aa)
	PV07_06075	GTP-binding protein ypt5. (219 aa)
	PV07_02856	CNH domain-containing protein. (1206 aa)
	PV07_05292	t-SNARE coiled-coil homology domain-containing protein. (183 aa)
	PV07_05142	t-SNARE coiled-coil homology domain-containing protein. (265 aa)
	PV07_07388	Uncharacterized protein. (989 aa)
	PV07_07294	Uncharacterized protein; Belongs to the synaptobrevin family. (215 aa)
	PV07_08258	Uncharacterized protein. (1307 aa)
	PV07_08307	Uncharacterized protein. (221 aa)
	PV07_02272	Protein transport protein BOS1; SNARE required for protein transport between the ER and the Golgi complex. (243 aa)
	PV07_11501	Uncharacterized protein. (771 aa)
	PV07_11978	Uncharacterized protein. (982 aa)
	PV07_06534	V-SNARE coiled-coil homology domain-containing protein. (114 aa)
	PV07_06952	Pep3_Vps18 domain-containing protein. (963 aa)
	PV07_00321	VWFA domain-containing protein. (556 aa)
	PV07_01315	Helo_like_N domain-containing protein. (760 aa)
	PV07_01868	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (593 aa)
	PV07_02323	t-SNARE coiled-coil homology domain-containing protein. (229 aa)
	PV07_07908	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (774 aa)
	PV07_02365	CNH domain-containing protein. (1017 aa)
	PV07_03309	Uncharacterized protein. (252 aa)
	PV07_00508	TMF_TATA_bd domain-containing protein. (832 aa)
	PV07_01096	t-SNARE coiled-coil homology domain-containing protein. (281 aa)
	PV07_01014	E3 ubiquitin-protein ligase PEP5. (980 aa)
	PV07_11021	Vps8 domain-containing protein. (1558 aa)
	PV07_03681	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (263 aa)
	PV07_03292	GOLD domain-containing protein. (205 aa)
	PV07_07310	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (244 aa)
	PV07_06922	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (320 aa)
	PV07_09798	KxDL domain-containing protein. (188 aa)
	PV07_11502	Small COPII coat GTPase sar1; Belongs to the small GTPase superfamily. SAR1 family. (189 aa)

Your Current Organism:

Cladophialophora immunda

NCBI taxonomy Id: 569365
Other names: C. immunda, CBS 834.96, Cladophialophora sp. CBS 834.96, Cladophialophora sp. HB-2008

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV07_00037	PV07_01014	A0A0D1ZYH6	A0A0D2B9D8	Uncharacterized protein.	E3 ubiquitin-protein ligase PEP5.	0.476
PV07_00037	PV07_02365	A0A0D1ZYH6	A0A0D2D0C8	Uncharacterized protein.	CNH domain-containing protein.	0.561
PV07_00037	PV07_02856	A0A0D1ZYH6	A0A0D2CJ68	Uncharacterized protein.	CNH domain-containing protein.	0.528
PV07_00037	PV07_03681	A0A0D1ZYH6	A0A0D1ZVE8	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.415
PV07_00037	PV07_06075	A0A0D1ZYH6	A0A0D2CJN1	Uncharacterized protein.	GTP-binding protein ypt5.	0.548
PV07_00037	PV07_06952	A0A0D1ZYH6	A0A0D2C9S4	Uncharacterized protein.	Pep3_Vps18 domain-containing protein.	0.443
PV07_00059	PV07_03309	A0A0D2CPM1	A0A0D2D7I6	Uncharacterized protein.	Uncharacterized protein.	0.991
PV07_00059	PV07_08307	A0A0D2CPM1	A0A0D2CYK3	Uncharacterized protein.	Uncharacterized protein.	0.946
PV07_00059	PV07_09999	A0A0D2CPM1	A0A0D2AHA8	Uncharacterized protein.	Uncharacterized protein.	0.891
PV07_00321	PV07_02272	A0A0D2CQJ7	A0A0D2D052	VWFA domain-containing protein.	Protein transport protein BOS1; SNARE required for protein transport between the ER and the Golgi complex.	0.722
PV07_00321	PV07_03292	A0A0D2CQJ7	A0A0D1ZU98	VWFA domain-containing protein.	GOLD domain-containing protein.	0.728
PV07_00321	PV07_03681	A0A0D2CQJ7	A0A0D1ZVE8	VWFA domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.673
PV07_00321	PV07_05292	A0A0D2CQJ7	A0A0D2CED3	VWFA domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.675
PV07_00321	PV07_06818	A0A0D2CQJ7	A0A0D2APP0	VWFA domain-containing protein.	Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.	0.973
PV07_00321	PV07_06922	A0A0D2CQJ7	A0A0D1ZGU6	VWFA domain-containing protein.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.965
PV07_00321	PV07_07294	A0A0D2CQJ7	A0A0D2CAX4	VWFA domain-containing protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.731
PV07_00321	PV07_07908	A0A0D2CQJ7	A0A0D2CX86	VWFA domain-containing protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.958
PV07_00321	PV07_10796	A0A0D2CQJ7	A0A0D2AJR1	VWFA domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.782
PV07_00321	PV07_11501	A0A0D2CQJ7	A0A0D2BY75	VWFA domain-containing protein.	Uncharacterized protein.	0.736
PV07_00321	PV07_11502	A0A0D2CQJ7	A0A0D1Z6M2	VWFA domain-containing protein.	Small COPII coat GTPase sar1; Belongs to the small GTPase superfamily. SAR1 family.	0.736