(27 nodes) Late endosome to vacuole transport network (Cladophialophora immunda)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV07_00476	Uncharacterized protein. (285 aa)
	PV07_03408	Uncharacterized protein. (193 aa)
	PV07_00423	Uncharacterized protein. (226 aa)
	PV07_11306	Uncharacterized protein. (520 aa)
	PV07_09706	Uncharacterized protein. (337 aa)
	PV07_09999	Uncharacterized protein. (217 aa)
	PV07_08171	Uncharacterized protein. (658 aa)
	PV07_03886	Uncharacterized protein. (206 aa)
	PV07_04272	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (861 aa)
	PV07_01876	Coatomer subunit epsilon; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Belongs to the COPE family. (298 aa)
	PV07_08608	Vacuolar protein sorting-associated protein; May be involved in recycling of membrane proteins between an endocytic compartment and the TGN; Belongs to the VPS13 family. (3181 aa)
	PV07_06660	Uncharacterized protein. (172 aa)
	PV07_07621	MPN domain-containing protein. (497 aa)
	PV07_02659	Vacuolar protein sorting-associated protein 28; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (242 aa)
	PV07_09787	Uncharacterized protein. (855 aa)
	PV07_00039	Uncharacterized protein. (220 aa)
	PV07_03526	E3 ubiquitin-protein ligase. (809 aa)
	PV07_00059	Uncharacterized protein. (506 aa)
	PV07_00963	Uncharacterized protein. (1684 aa)
	PV07_04590	BRO1 domain-containing protein. (1074 aa)
	PV07_06659	Uncharacterized protein. (130 aa)
	PV07_00366	Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology. (830 aa)
	PV07_07555	Uncharacterized protein; Belongs to the AAA ATPase family. (436 aa)
	PV07_08307	Uncharacterized protein. (221 aa)
	PV07_03309	Uncharacterized protein. (252 aa)
	PV07_04051	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family. (255 aa)
	PV07_04320	GLUE N-terminal domain-containing protein. (607 aa)

Your Current Organism:

Cladophialophora immunda

NCBI taxonomy Id: 569365
Other names: C. immunda, CBS 834.96, Cladophialophora sp. CBS 834.96, Cladophialophora sp. HB-2008

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV07_00039	PV07_00059	A0A0D2CPK8	A0A0D2CPM1	Uncharacterized protein.	Uncharacterized protein.	0.925
PV07_00039	PV07_00423	A0A0D2CPK8	A0A0D1ZZM8	Uncharacterized protein.	Uncharacterized protein.	0.999
PV07_00039	PV07_01876	A0A0D2CPK8	A0A0D2BC76	Uncharacterized protein.	Coatomer subunit epsilon; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Belongs to the COPE family.	0.445
PV07_00039	PV07_02659	A0A0D2CPK8	A0A0D2CIQ0	Uncharacterized protein.	Vacuolar protein sorting-associated protein 28; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.873
PV07_00039	PV07_03309	A0A0D2CPK8	A0A0D2D7I6	Uncharacterized protein.	Uncharacterized protein.	0.997
PV07_00039	PV07_03408	A0A0D2CPK8	A0A0D1ZUK8	Uncharacterized protein.	Uncharacterized protein.	0.915
PV07_00039	PV07_03886	A0A0D2CPK8	A0A0D2B423	Uncharacterized protein.	Uncharacterized protein.	0.994
PV07_00039	PV07_04051	A0A0D2CPK8	A0A0D2DA27	Uncharacterized protein.	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	0.916
PV07_00039	PV07_04320	A0A0D2CPK8	A0A0D2DAQ8	Uncharacterized protein.	GLUE N-terminal domain-containing protein.	0.920
PV07_00039	PV07_07555	A0A0D2CPK8	A0A0D2CW13	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.992
PV07_00039	PV07_07621	A0A0D2CPK8	A0A0D2CC23	Uncharacterized protein.	MPN domain-containing protein.	0.802
PV07_00039	PV07_08307	A0A0D2CPK8	A0A0D2CYK3	Uncharacterized protein.	Uncharacterized protein.	0.999
PV07_00039	PV07_09706	A0A0D2CPK8	A0A0D2AGF7	Uncharacterized protein.	Uncharacterized protein.	0.947
PV07_00039	PV07_09999	A0A0D2CPK8	A0A0D2AHA8	Uncharacterized protein.	Uncharacterized protein.	0.986
PV07_00039	PV07_11306	A0A0D2CPK8	A0A0D2ADV7	Uncharacterized protein.	Uncharacterized protein.	0.922
PV07_00059	PV07_00039	A0A0D2CPM1	A0A0D2CPK8	Uncharacterized protein.	Uncharacterized protein.	0.925
PV07_00059	PV07_00423	A0A0D2CPM1	A0A0D1ZZM8	Uncharacterized protein.	Uncharacterized protein.	0.992
PV07_00059	PV07_02659	A0A0D2CPM1	A0A0D2CIQ0	Uncharacterized protein.	Vacuolar protein sorting-associated protein 28; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.808
PV07_00059	PV07_03309	A0A0D2CPM1	A0A0D2D7I6	Uncharacterized protein.	Uncharacterized protein.	0.991
PV07_00059	PV07_03408	A0A0D2CPM1	A0A0D1ZUK8	Uncharacterized protein.	Uncharacterized protein.	0.849