(19 nodes) Barbed-end actin filament capping network (Cladophialophora immunda)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV07_00327	Aldolase_II domain-containing protein. (285 aa)
	PV07_10109	Uncharacterized protein. (376 aa)
	PV07_05479	RRN9 domain-containing protein. (742 aa)
	PV07_05572	Zn(2)-C6 fungal-type domain-containing protein. (410 aa)
	PV07_10023	Zn(2)-C6 fungal-type domain-containing protein. (412 aa)
	PV07_00988	DUF4045 domain-containing protein. (1675 aa)
	PV07_11713	Zn(2)-C6 fungal-type domain-containing protein. (396 aa)
	PV07_03362	Uncharacterized protein. (341 aa)
	PV07_04942	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments. (273 aa)
	PV07_12475	F-actin-capping protein subunit alpha; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments. (279 aa)
	PV07_05341	Aldolase_II domain-containing protein. (290 aa)
	PV07_04748	Aldolase_II domain-containing protein. (294 aa)
	PV07_10077	Aldolase_II domain-containing protein. (206 aa)
	PV07_10054	Zn(2)-C6 fungal-type domain-containing protein. (394 aa)
	PV07_12476	Uncharacterized protein. (654 aa)
	PV07_06764	Zn(2)-C6 fungal-type domain-containing protein. (392 aa)
	PV07_06487	Uncharacterized protein. (1805 aa)
	PV07_12458	WD_REPEATS_REGION domain-containing protein. (626 aa)
	PV07_00457	Uncharacterized protein. (394 aa)

Your Current Organism:

Cladophialophora immunda

NCBI taxonomy Id: 569365
Other names: C. immunda, CBS 834.96, Cladophialophora sp. CBS 834.96, Cladophialophora sp. HB-2008

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV07_00988	PV07_10109	A0A0D2CSN5	A0A0D1Z9L9	DUF4045 domain-containing protein.	Uncharacterized protein.	0.787
PV07_00988	PV07_12458	A0A0D2CSN5	A0A0D2ABJ8	DUF4045 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.420
PV07_03362	PV07_04942	A0A0D2CP06	A0A0D2CFV9	Uncharacterized protein.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.969
PV07_03362	PV07_10109	A0A0D2CP06	A0A0D1Z9L9	Uncharacterized protein.	Uncharacterized protein.	0.679
PV07_03362	PV07_12458	A0A0D2CP06	A0A0D2ABJ8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.602
PV07_04942	PV07_03362	A0A0D2CFV9	A0A0D2CP06	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	Uncharacterized protein.	0.969
PV07_04942	PV07_05479	A0A0D2CFV9	A0A0D2D1Q4	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	RRN9 domain-containing protein.	0.965
PV07_04942	PV07_10109	A0A0D2CFV9	A0A0D1Z9L9	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	Uncharacterized protein.	0.968
PV07_04942	PV07_12458	A0A0D2CFV9	A0A0D2ABJ8	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	WD_REPEATS_REGION domain-containing protein.	0.923
PV07_04942	PV07_12475	A0A0D2CFV9	A0A0D2CF20	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	F-actin-capping protein subunit alpha; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.987
PV07_04942	PV07_12476	A0A0D2CFV9	A0A0D2BUR5	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	Uncharacterized protein.	0.970
PV07_05479	PV07_04942	A0A0D2D1Q4	A0A0D2CFV9	RRN9 domain-containing protein.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.965
PV07_05479	PV07_10109	A0A0D2D1Q4	A0A0D1Z9L9	RRN9 domain-containing protein.	Uncharacterized protein.	0.679
PV07_05479	PV07_12458	A0A0D2D1Q4	A0A0D2ABJ8	RRN9 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.578
PV07_10109	PV07_00988	A0A0D1Z9L9	A0A0D2CSN5	Uncharacterized protein.	DUF4045 domain-containing protein.	0.787
PV07_10109	PV07_03362	A0A0D1Z9L9	A0A0D2CP06	Uncharacterized protein.	Uncharacterized protein.	0.679
PV07_10109	PV07_04942	A0A0D1Z9L9	A0A0D2CFV9	Uncharacterized protein.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.968
PV07_10109	PV07_05479	A0A0D1Z9L9	A0A0D2D1Q4	Uncharacterized protein.	RRN9 domain-containing protein.	0.679
PV07_10109	PV07_12458	A0A0D1Z9L9	A0A0D2ABJ8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.557
PV07_10109	PV07_12475	A0A0D1Z9L9	A0A0D2CF20	Uncharacterized protein.	F-actin-capping protein subunit alpha; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.679