(118 nodes) Cellular response to organic substance network (Cladophialophora immunda)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV07_00508	TMF_TATA_bd domain-containing protein. (832 aa)
	PV07_02169	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (356 aa)
	PV07_01087	Uncharacterized protein. (473 aa)
	PV07_07743	Opy2 domain-containing protein. (452 aa)
	PV07_07784	Uncharacterized protein. (1492 aa)
	PV07_01253	Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. (537 aa)
	PV07_08292	Alcohol dehydrogenase 1. (357 aa)
	PV07_01782	Uncharacterized protein. (362 aa)
	PV07_01285	Ubiquitin carboxyl-terminal hydrolase. (326 aa)
	PV07_01091	Uncharacterized protein. (415 aa)
	PV07_00639	Abhydrolase_3 domain-containing protein. (355 aa)
	PV07_00359	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily. (1597 aa)
	PV07_00191	Zn(2)-C6 fungal-type domain-containing protein. (719 aa)
	PV07_04242	Uncharacterized protein. (761 aa)
	PV07_03648	SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family. (226 aa)
	PV07_03237	SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family. (216 aa)
	PV07_03234	SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family. (247 aa)
	PV07_03138	Uncharacterized protein. (359 aa)
	PV07_03112	Uncharacterized protein. (483 aa)
	PV07_03050	Uncharacterized protein. (676 aa)
	PV07_02913	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (457 aa)
	PV07_02824	Uncharacterized protein. (313 aa)
	PV07_02747	Uncharacterized protein. (345 aa)
	PV07_02235	Stress-response A/B barrel domain-containing protein. (100 aa)
	PV07_02098	Zn(2)-C6 fungal-type domain-containing protein. (687 aa)
	PV07_04777	Uncharacterized protein. (388 aa)
	PV07_12248	Uncharacterized protein. (1134 aa)
	PV07_11957	Uncharacterized protein. (340 aa)
	PV07_10255	Uncharacterized protein. (147 aa)
	PV07_09223	Uncharacterized protein. (337 aa)
	PV07_06594	Abhydrolase_3 domain-containing protein. (342 aa)
	PV07_06606	Uncharacterized protein. (456 aa)
	PV07_06661	Fes1 domain-containing protein. (207 aa)
	PV07_06970	Uncharacterized protein. (365 aa)
	PV07_07214	Uncharacterized protein. (1474 aa)
	PV07_07839	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (357 aa)
	PV07_05880	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (319 aa)
	PV07_02418	Uncharacterized protein. (1341 aa)
	PV07_03621	Stress-response A/B barrel domain-containing protein. (102 aa)
	PV07_03658	Abhydrolase_3 domain-containing protein. (396 aa)
	PV07_03676	Uncharacterized protein; Involved in ubiquitin-mediated protein degradation. Regulatory factor in the ubiquitin/proteasome pathway that controls the turnover of proteasome substrates. Targets proteasomes to the nucleus and facilitates the degradation of nuclear proteins. (301 aa)
	PV07_04263	Uncharacterized protein. (595 aa)
	PV07_04456	Amidohydro-rel domain-containing protein. (458 aa)
	PV07_04510	Uncharacterized protein. (285 aa)
	PV07_00042	PPM-type phosphatase domain-containing protein. (483 aa)
	PV07_00866	Uncharacterized protein. (359 aa)
	PV07_02167	Calcineurin subunit B. (201 aa)
	PV07_02278	Zn(2)-C6 fungal-type domain-containing protein. (684 aa)
	PV07_02302	Stress-response A/B barrel domain-containing protein. (123 aa)
	PV07_02346	N-acetylglucosamine-6-phosphate deacetylase; Belongs to the metallo-dependent hydrolases superfamily. NagA family. (398 aa)
	PV07_12473	Chaperone DnaK; Belongs to the heat shock protein 70 family. (685 aa)
	PV07_12127	Fungal_trans domain-containing protein. (566 aa)
	PV07_12295	Adenylyl cyclase-associated protein; Belongs to the CAP family. (525 aa)
	PV07_12400	Uncharacterized protein. (118 aa)
	PV07_11387	Uncharacterized protein; Belongs to the cytochrome P450 family. (561 aa)
	PV07_09679	Stress-response A/B barrel domain-containing protein. (98 aa)
	PV07_09879	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (323 aa)
	PV07_09902	Uncharacterized protein. (506 aa)
	PV07_10141	Non-specific serine/threonine protein kinase. (872 aa)
	PV07_08729	Protein kinase domain-containing protein. (206 aa)
	PV07_09509	CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family. (472 aa)
	PV07_07169	ANK_REP_REGION domain-containing protein. (652 aa)
	PV07_07275	Fungal_trans domain-containing protein. (559 aa)
	PV07_04865	Uncharacterized protein. (483 aa)
	PV07_04993	SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family. (278 aa)
	PV07_05450	Cell division control protein 42, variant 1. (193 aa)
	PV07_05521	Methyltranfer_dom domain-containing protein. (639 aa)
	PV07_05653	Uncharacterized protein. (685 aa)
	PV07_06032	Uncharacterized protein. (770 aa)
	PV07_02822	Hsp98-like protein; Belongs to the ClpA/ClpB family. (930 aa)
	PV07_02911	Uncharacterized protein. (752 aa)
	PV07_01112	Uncharacterized protein. (1056 aa)
	PV07_01397	Uncharacterized protein. (354 aa)
	PV07_01953	Uncharacterized protein. (1143 aa)
	PV07_02043	Uncharacterized protein. (470 aa)
	PV07_12158	Hsp7-like protein; Belongs to the heat shock protein 70 family. (675 aa)
	PV07_10849	Uncharacterized protein. (446 aa)
	PV07_11039	Flavin_Reduct domain-containing protein. (336 aa)
	PV07_12106	Uncharacterized protein. (192 aa)
	PV07_11106	AAA domain-containing protein. (722 aa)
	PV07_11123	Hsp90-like protein. (702 aa)
	PV07_12191	Guanine nucleotide-binding protein subunit alpha. (353 aa)
	PV07_10949	Uncharacterized protein. (969 aa)
	PV07_11657	Abhydrolase_3 domain-containing protein. (490 aa)
	PV07_11993	Abhydrolase_3 domain-containing protein. (236 aa)
	PV07_12065	Uncharacterized protein. (336 aa)
	PV07_10262	Uncharacterized protein. (348 aa)
	PV07_12028	Fungal_trans domain-containing protein. (520 aa)
	PV07_10794	FHA domain-containing protein. (733 aa)
	PV07_09328	Abhydrolase_3 domain-containing protein. (368 aa)
	PV07_09622	Uncharacterized protein. (796 aa)
	PV07_07134	Non-specific serine/threonine protein kinase. (889 aa)
	PV07_06638	Uncharacterized protein. (356 aa)
	PV07_07438	Uncharacterized protein. (443 aa)
	PV07_07172	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family. (264 aa)
	PV07_07912	Uncharacterized protein. (1058 aa)
	PV07_08172	Protein kinase domain-containing protein. (540 aa)
	PV07_04799	Abhydrolase_3 domain-containing protein. (387 aa)
	PV07_05031	NmrA domain-containing protein. (353 aa)
	PV07_10867	PRKCSH domain-containing protein. (475 aa)
	PV07_05632	Uncharacterized protein. (314 aa)
	PV07_05695	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily. (1365 aa)
	PV07_06306	SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family. (351 aa)
	PV07_03757	Uncharacterized protein. (344 aa)
	PV07_02790	Uncharacterized protein. (458 aa)
	PV07_03277	Uncharacterized protein. (326 aa)
	PV07_03445	J domain-containing protein. (350 aa)
	PV07_08996	Uncharacterized protein. (317 aa)
	PV07_09293	Uncharacterized protein. (1191 aa)
	PV07_06484	Uncharacterized protein. (927 aa)
	PV07_01040	Cell division control protein 48; Belongs to the AAA ATPase family. (820 aa)
	PV07_06525	Uncharacterized protein. (733 aa)
	PV07_06852	Uncharacterized protein; Belongs to the BI1 family. (277 aa)
	PV07_01558	WD_REPEATS_REGION domain-containing protein. (1460 aa)
	PV07_00604	Guanine nucleotide-binding protein subunit beta. (353 aa)
	PV07_02066	ATPase_AAA_core domain-containing protein. (477 aa)
	PV07_07639	Uncharacterized protein. (356 aa)
	PV07_01038	Uncharacterized protein. (556 aa)

Your Current Organism:

Cladophialophora immunda

NCBI taxonomy Id: 569365
Other names: C. immunda, CBS 834.96, Cladophialophora sp. CBS 834.96, Cladophialophora sp. HB-2008

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV07_00042	PV07_01253	A0A0D1ZYI1	A0A0D2CXA7	PPM-type phosphatase domain-containing protein.	Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	0.452
PV07_00042	PV07_02822	A0A0D1ZYI1	A0A0D2B0P3	PPM-type phosphatase domain-containing protein.	Hsp98-like protein; Belongs to the ClpA/ClpB family.	0.475
PV07_00042	PV07_06484	A0A0D1ZYI1	A0A0D2CST3	PPM-type phosphatase domain-containing protein.	Uncharacterized protein.	0.645
PV07_00042	PV07_07839	A0A0D1ZYI1	A0A0D1ZJJ0	PPM-type phosphatase domain-containing protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.863
PV07_00042	PV07_08172	A0A0D1ZYI1	A0A0D2CBV5	PPM-type phosphatase domain-containing protein.	Protein kinase domain-containing protein.	0.543
PV07_00042	PV07_11106	A0A0D1ZYI1	A0A0D2BUW6	PPM-type phosphatase domain-containing protein.	AAA domain-containing protein.	0.475
PV07_00359	PV07_05695	A0A0D2DCW4	A0A0D2CID1	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.443
PV07_00604	PV07_01038	A0A0D2CV56	A0A0D2CWH7	Guanine nucleotide-binding protein subunit beta.	Uncharacterized protein.	0.592
PV07_00604	PV07_01253	A0A0D2CV56	A0A0D2CXA7	Guanine nucleotide-binding protein subunit beta.	Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	0.509
PV07_00604	PV07_01953	A0A0D2CV56	A0A0D2BCH8	Guanine nucleotide-binding protein subunit beta.	Uncharacterized protein.	0.937
PV07_00604	PV07_02824	A0A0D2CV56	A0A0D2D633	Guanine nucleotide-binding protein subunit beta.	Uncharacterized protein.	0.601
PV07_00604	PV07_04263	A0A0D2CV56	A0A0D1ZX48	Guanine nucleotide-binding protein subunit beta.	Uncharacterized protein.	0.955
PV07_00604	PV07_05450	A0A0D2CV56	A0A0D2AWJ7	Guanine nucleotide-binding protein subunit beta.	Cell division control protein 42, variant 1.	0.851
PV07_00604	PV07_06032	A0A0D2CV56	A0A0D2AYA7	Guanine nucleotide-binding protein subunit beta.	Uncharacterized protein.	0.665
PV07_00604	PV07_06484	A0A0D2CV56	A0A0D2CST3	Guanine nucleotide-binding protein subunit beta.	Uncharacterized protein.	0.688
PV07_00604	PV07_06661	A0A0D2CV56	A0A0D1ZG75	Guanine nucleotide-binding protein subunit beta.	Fes1 domain-containing protein.	0.495
PV07_00604	PV07_06970	A0A0D2CV56	A0A0D1ZGZ1	Guanine nucleotide-binding protein subunit beta.	Uncharacterized protein.	0.559
PV07_00604	PV07_07134	A0A0D2CV56	A0A0D2C8G7	Guanine nucleotide-binding protein subunit beta.	Non-specific serine/threonine protein kinase.	0.906
PV07_00604	PV07_07839	A0A0D2CV56	A0A0D1ZJJ0	Guanine nucleotide-binding protein subunit beta.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.899
PV07_00604	PV07_08172	A0A0D2CV56	A0A0D2CBV5	Guanine nucleotide-binding protein subunit beta.	Protein kinase domain-containing protein.	0.607