(20 nodes) Reactive oxygen species metabolic process network (Cladophialophora immunda)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV07_08531	Uncharacterized protein. (557 aa)
	PV07_00114	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide. Belongs to the catalase family. (749 aa)
	PV07_00225	Catalase domain-containing protein. (496 aa)
	PV07_06041	Uncharacterized protein. (339 aa)
	PV07_07330	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily. (165 aa)
	PV07_06833	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide. (494 aa)
	PV07_04580	Uncharacterized protein. (309 aa)
	PV07_09117	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (232 aa)
	PV07_08986	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (217 aa)
	PV07_06584	Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. (154 aa)
	PV07_07722	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide. (584 aa)
	PV07_05810	Catalase domain-containing protein. (358 aa)
	PV07_11056	Uncharacterized protein. (374 aa)
	PV07_07280	Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide. (752 aa)
	PV07_07824	Uncharacterized protein. (119 aa)
	PV07_05052	Catalase domain-containing protein. (322 aa)
	PV07_08530	HMA domain-containing protein. (248 aa)
	PV07_03175	Peroxidase; Belongs to the peroxidase family. (359 aa)
	katG	Catalase-peroxidase; Belongs to the peroxidase family. Peroxidase/catalase subfamily. (783 aa)
	PV07_03262	Catalase domain-containing protein. (522 aa)

Your Current Organism:

Cladophialophora immunda

NCBI taxonomy Id: 569365
Other names: C. immunda, CBS 834.96, Cladophialophora sp. CBS 834.96, Cladophialophora sp. HB-2008

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV07_00114	PV07_00225	A0A0D2CPT5	A0A0D2CQ68	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide. Belongs to the catalase family.	Catalase domain-containing protein.	0.532
PV07_00114	PV07_03262	A0A0D2CPT5	A0A0D2CNN6	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide. Belongs to the catalase family.	Catalase domain-containing protein.	0.535
PV07_00114	PV07_05052	A0A0D2CPT5	A0A0D2AVC2	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide. Belongs to the catalase family.	Catalase domain-containing protein.	0.528
PV07_00114	PV07_06041	A0A0D2CPT5	A0A0D2CJJ3	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide. Belongs to the catalase family.	Uncharacterized protein.	0.596
PV07_00114	PV07_06584	A0A0D2CPT5	A0A0D1ZFZ6	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide. Belongs to the catalase family.	Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.	0.762
PV07_00114	PV07_06833	A0A0D2CPT5	A0A0D2CTZ0	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide. Belongs to the catalase family.	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide.	0.521
PV07_00114	PV07_07280	A0A0D2CPT5	A0A0D2AR68	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide. Belongs to the catalase family.	Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.	0.779
PV07_00114	PV07_07722	A0A0D2CPT5	A0A0D1ZJA6	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide. Belongs to the catalase family.	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide.	0.532
PV07_00114	PV07_08986	A0A0D2CPT5	A0A0D1ZDL5	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide. Belongs to the catalase family.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.635
PV07_00114	PV07_09117	A0A0D2CPT5	A0A0D2CQX5	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide. Belongs to the catalase family.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.635
PV07_00114	PV07_11056	A0A0D2CPT5	A0A0D2AD46	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide. Belongs to the catalase family.	Uncharacterized protein.	0.596
PV07_00114	katG	A0A0D2CPT5	A0A0D2CNH7	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide. Belongs to the catalase family.	Catalase-peroxidase; Belongs to the peroxidase family. Peroxidase/catalase subfamily.	0.814
PV07_00225	PV07_00114	A0A0D2CQ68	A0A0D2CPT5	Catalase domain-containing protein.	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide. Belongs to the catalase family.	0.532
PV07_00225	PV07_06041	A0A0D2CQ68	A0A0D2CJJ3	Catalase domain-containing protein.	Uncharacterized protein.	0.596
PV07_00225	PV07_06584	A0A0D2CQ68	A0A0D1ZFZ6	Catalase domain-containing protein.	Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.	0.784
PV07_00225	PV07_07280	A0A0D2CQ68	A0A0D2AR68	Catalase domain-containing protein.	Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.	0.538
PV07_00225	PV07_08986	A0A0D2CQ68	A0A0D1ZDL5	Catalase domain-containing protein.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.635
PV07_00225	PV07_09117	A0A0D2CQ68	A0A0D2CQX5	Catalase domain-containing protein.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.635
PV07_00225	PV07_11056	A0A0D2CQ68	A0A0D2AD46	Catalase domain-containing protein.	Uncharacterized protein.	0.596
PV07_00225	katG	A0A0D2CQ68	A0A0D2CNH7	Catalase domain-containing protein.	Catalase-peroxidase; Belongs to the peroxidase family. Peroxidase/catalase subfamily.	0.531