STRINGSTRING
PV07_12399 PV07_12399 PV07_10887 PV07_10887 PV07_09731 PV07_09731 PV07_09264 PV07_09264 PV07_06758 PV07_06758 PV07_07210 PV07_07210 PV07_08277 PV07_08277 PV07_04756 PV07_04756 PV07_05218 PV07_05218 PV07_05454 PV07_05454 PV07_05721 PV07_05721 PV07_05902 PV07_05902 PV07_02463 PV07_02463 PV07_02777 PV07_02777 PV07_03086 PV07_03086 PV07_04586 PV07_04586 PV07_04142 PV07_04142 PV07_03970 PV07_03970 PV07_09425 PV07_09425 PV07_09362 PV07_09362 PV07_03482 PV07_03482 PV07_03586 PV07_03586 PV07_04594 PV07_04594 PV07_00532 PV07_00532 PV07_00719 PV07_00719 PV07_00950 PV07_00950 PV07_01426 PV07_01426 PV07_05873 PV07_05873 PV07_03098 PV07_03098 PV07_05694 PV07_05694 PV07_05616 PV07_05616 PV07_04749 PV07_04749 PV07_01932 PV07_01932 PV07_01518 PV07_01518 PV07_01134 PV07_01134 PV07_02071 PV07_02071 PV07_00865 PV07_00865 PV07_07382 PV07_07382 PV07_07327 PV07_07327 PV07_01645 PV07_01645 PV07_00292 PV07_00292 PV07_06898 PV07_06898 PV07_04566 PV07_04566 PV07_06544 PV07_06544 PV07_00887 PV07_00887 PV07_00849 PV07_00849 PV07_11503 PV07_11503 PV07_11671 PV07_11671 PV07_11980 PV07_11980 PV07_09727 PV07_09727 PV07_10597 PV07_10597 PV07_01107 PV07_01107 PV07_12869 PV07_12869 PV07_12481 PV07_12481 PV07_12222 PV07_12222 PV07_12325 PV07_12325 PV07_00448 PV07_00448 PV07_03677 PV07_03677 PV07_03216 PV07_03216 PV07_02999 PV07_02999 PV07_05712 PV07_05712 PV07_11407 PV07_11407 PV07_08555 PV07_08555 PV07_05614 PV07_05614 PV07_04683 PV07_04683 PV07_04677 PV07_04677 PV07_08305 PV07_08305 PV07_06675 PV07_06675 PV07_09491 PV07_09491 PV07_09408 PV07_09408 PV07_09393 PV07_09393 PV07_11662 PV07_11662 USB1 USB1 PV07_11772 PV07_11772 PV07_10428 PV07_10428 PV07_08387 PV07_08387 PV07_10775 PV07_10775 PV07_09366 PV07_09366 PV07_09123 PV07_09123 PV07_07036 PV07_07036 PV07_07307 PV07_07307 PV07_07204 PV07_07204 PV07_08119 PV07_08119 PV07_07682 PV07_07682 PV07_04667 PV07_04667 PV07_04670 PV07_04670 PV07_07715 PV07_07715 PV07_05522 PV07_05522 PV07_11182 PV07_11182 PV07_05505 PV07_05505 PV07_02475 PV07_02475 PV07_02527 PV07_02527 PAN2 PAN2 PV07_11888 PV07_11888 PV07_06389 PV07_06389 PV07_02421 PV07_02421 PV07_02786 PV07_02786 PV07_10490 PV07_10490 PV07_10798 PV07_10798 PV07_08815 PV07_08815 PV07_08816 PV07_08816 PV07_00220 PV07_00220 PV07_00407 PV07_00407 PV07_00449 PV07_00449 PV07_11140 PV07_11140 PV07_12272 PV07_12272 PV07_00677 PV07_00677 PV07_00337 PV07_00337 PV07_00293 PV07_00293 PV07_09293 PV07_09293 PV07_09163 PV07_09163 PV07_12437 PV07_12437
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PV07_12399Endonuclease. (360 aa)
PV07_10887Uncharacterized protein. (490 aa)
PV07_09731Uncharacterized protein. (430 aa)
PV07_09264Uncharacterized protein. (937 aa)
PV07_06758Uncharacterized protein. (495 aa)
PV07_07210RAI1 domain-containing protein. (392 aa)
PV07_08277Uncharacterized protein. (436 aa)
PV07_04756Brix domain-containing protein. (337 aa)
PV07_05218RNase III domain-containing protein. (281 aa)
PV07_05454Uncharacterized protein. (377 aa)
PV07_05721Uncharacterized protein. (164 aa)
PV07_05902Uncharacterized protein. (273 aa)
PV07_02463Uncharacterized protein. (658 aa)
PV07_02777Uncharacterized protein. (874 aa)
PV07_03086Nudix hydrolase domain-containing protein. (379 aa)
PV07_04586KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (336 aa)
PV07_04142Uncharacterized protein. (399 aa)
PV07_03970WD_REPEATS_REGION domain-containing protein. (967 aa)
PV07_09425Pre-rRNA-processing protein PNO1. (267 aa)
PV07_09362WD_REPEATS_REGION domain-containing protein. (603 aa)
PV07_03482Kri1_C domain-containing protein. (609 aa)
PV07_03586Uncharacterized protein. (302 aa)
PV07_04594SAP30_Sin3_bdg domain-containing protein. (297 aa)
PV07_00532DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (123 aa)
PV07_00719Uncharacterized protein. (254 aa)
PV07_00950Fip1 domain-containing protein. (319 aa)
PV07_01426Uncharacterized protein. (763 aa)
PV07_05873PINc domain-containing protein. (194 aa)
PV07_03098RNB domain-containing protein. (1366 aa)
PV07_05694Uncharacterized protein. (291 aa)
PV07_05616tRNA-intron endonuclease. (549 aa)
PV07_04749F-box domain-containing protein. (343 aa)
PV07_01932DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (117 aa)
PV07_01518Uncharacterized protein. (531 aa)
PV07_01134Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (263 aa)
PV07_02071Bms1-type G domain-containing protein. (1176 aa)
PV07_00865DBR1 domain-containing protein. (872 aa)
PV07_07382Cleavage and polyadenylation specificity factor subunit 2. (949 aa)
PV07_07327Uncharacterized protein. (1104 aa)
PV07_0164540S ribosomal protein S21; Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Has a physiological role leading to 18S rRNA stability. (88 aa)
PV07_00292Uncharacterized protein. (283 aa)
PV07_06898Fcf2 domain-containing protein. (231 aa)
PV07_0456618S rRNA biogenesis protein RCL1. (407 aa)
PV07_06544Uncharacterized protein; Belongs to the argonaute family. (1005 aa)
PV07_00887Uncharacterized protein. (318 aa)
PV07_00849RNase III domain-containing protein. (180 aa)
PV07_11503Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (324 aa)
PV07_11671Uncharacterized protein. (360 aa)
PV07_119805'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (1031 aa)
PV07_09727RNase III domain-containing protein. (297 aa)
PV07_10597Uncharacterized protein; Belongs to the RNase T2 family. (357 aa)
PV07_01107Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1567 aa)
PV07_12869Piwi domain-containing protein. (152 aa)
PV07_12481CBF domain-containing protein. (293 aa)
PV07_12222Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1430 aa)
PV07_12325Bms1-type G domain-containing protein. (861 aa)
PV07_00448tRNA-splicing endonuclease subunit Sen34; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structura [...] (312 aa)
PV07_03677Uncharacterized protein. (1069 aa)
PV07_03216Uncharacterized protein. (440 aa)
PV07_02999KH_dom_type_1 domain-containing protein. (247 aa)
PV07_05712Uncharacterized protein. (263 aa)
PV07_11407Exonuclease domain-containing protein. (746 aa)
PV07_08555Ribosomal_L7Ae domain-containing protein. (301 aa)
PV07_0561420S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (448 aa)
PV07_04683Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (339 aa)
PV07_04677RNase H domain-containing protein. (514 aa)
PV07_08305HRDC domain-containing protein. (847 aa)
PV07_06675Uncharacterized protein. (307 aa)
PV07_09491Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (242 aa)
PV07_09408Uncharacterized protein. (274 aa)
PV07_09393Uncharacterized protein. (135 aa)
PV07_11662Endo/exonuclease/phosphatase domain-containing protein. (746 aa)
USB1U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family. (316 aa)
PV07_11772Exonuclease domain-containing protein. (246 aa)
PV07_10428Uncharacterized protein. (246 aa)
PV07_08387Uncharacterized protein. (675 aa)
PV07_10775Uncharacterized protein. (87 aa)
PV07_09366WD_REPEATS_REGION domain-containing protein. (998 aa)
PV07_09123WD_REPEATS_REGION domain-containing protein. (559 aa)
PV07_07036Uncharacterized protein. (159 aa)
PV07_07307Uncharacterized protein. (1145 aa)
PV07_07204RNase_PH domain-containing protein. (362 aa)
PV07_08119RNase H domain-containing protein. (220 aa)
PV07_07682Uncharacterized protein. (542 aa)
PV07_04667CID domain-containing protein. (646 aa)
PV07_04670Piwi domain-containing protein. (291 aa)
PV07_07715S1 motif domain-containing protein. (349 aa)
PV07_05522WD_REPEATS_REGION domain-containing protein. (899 aa)
PV07_11182DUF3453 domain-containing protein. (776 aa)
PV07_055055'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins. (1415 aa)
PV07_02475RNB domain-containing protein. (1111 aa)
PV07_02527Piwi domain-containing protein. (1106 aa)
PAN2PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...] (1189 aa)
PV07_11888Nop domain-containing protein. (653 aa)
PV07_06389Uncharacterized protein; Belongs to the RNR ribonuclease family. (1006 aa)
PV07_02421RNase_PH domain-containing protein. (258 aa)
PV07_02786Uncharacterized protein. (1041 aa)
PV07_10490RRM domain-containing protein. (295 aa)
PV07_10798Uncharacterized protein. (263 aa)
PV07_08815Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1385 aa)
PV07_08816Uncharacterized protein. (1011 aa)
PV07_00220Uncharacterized protein. (762 aa)
PV07_00407Uncharacterized protein. (1797 aa)
PV07_00449Ribonuclease P protein subunit. (262 aa)
PV07_11140Uncharacterized protein. (255 aa)
PV07_12272Uncharacterized protein. (394 aa)
PV07_00677Uncharacterized protein. (484 aa)
PV07_00337Uncharacterized protein. (210 aa)
PV07_00293Uncharacterized protein. (367 aa)
PV07_09293Uncharacterized protein. (1191 aa)
PV07_09163RNase_PH domain-containing protein. (359 aa)
PV07_12437Uncharacterized protein. (550 aa)
Your Current Organism:
Cladophialophora immunda
NCBI taxonomy Id: 569365
Other names: C. immunda, CBS 834.96, Cladophialophora sp. CBS 834.96, Cladophialophora sp. HB-2008
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