105 items (Cladophialophora immunda) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV07_02296	Uncharacterized protein. (543 aa)
	PV07_06040	WD_REPEATS_REGION domain-containing protein. (574 aa)
	PV07_02885	Uncharacterized protein; Belongs to the cytochrome P450 family. (536 aa)
	PV07_02940	Pre-mRNA-splicing factor clf1. (680 aa)
	PV07_03224	Cir_N domain-containing protein. (394 aa)
	PV07_04257	Small nuclear ribonucleoprotein G. (80 aa)
	PV07_00340	RRM domain-containing protein. (378 aa)
	PV07_01265	Uncharacterized protein. (252 aa)
	PV07_01321	Uncharacterized protein. (596 aa)
	PV07_10688	BAG domain-containing protein. (348 aa)
	PV07_08458	Uncharacterized protein. (361 aa)
	PV07_08560	Branchpoint-bridging protein. (585 aa)
	PV07_09365	G-patch_2 domain-containing protein. (355 aa)
	PV07_06808	Uncharacterized protein. (332 aa)
	PV07_07145	Uncharacterized protein. (488 aa)
	PV07_05000	Uncharacterized protein. (644 aa)
	PV07_04867	Pre-mRNA-processing protein 45. (582 aa)
	PV07_01911	WD_REPEATS_REGION domain-containing protein. (360 aa)
	PV07_00636	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (174 aa)
	PV07_07212	Uncharacterized protein. (435 aa)
	PV07_01660	Pre-mRNA-splicing factor rse1. (1211 aa)
	PV07_00385	Pre-mRNA-splicing factor syf1. (851 aa)
	PV07_00222	Uncharacterized protein. (1228 aa)
	PV07_09662	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1418 aa)
	PV07_04418	C2H2-type domain-containing protein. (162 aa)
	PV07_00582	J domain-containing protein. (262 aa)
	PV07_03984	Uncharacterized protein. (547 aa)
	PV07_00383	Uncharacterized protein. (256 aa)
	PV07_09058	Glycerol kinase; Belongs to the FGGY kinase family. (532 aa)
	PV07_09015	Slu7 domain-containing protein. (532 aa)
	PV07_08923	FAD-binding PCMH-type domain-containing protein. (447 aa)
	PV07_08430	Tudor domain-containing protein. (293 aa)
	PV07_04076	Uncharacterized protein. (787 aa)
	PV07_10537	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43. (211 aa)
	PV07_09967	Uncharacterized protein. (516 aa)
	PV07_06368	Sm domain-containing protein. (237 aa)
	PV07_06021	Glycerol kinase; Belongs to the FGGY kinase family. (524 aa)
	PV07_02765	Uncharacterized protein. (384 aa)
	PV07_02575	Uncharacterized protein. (487 aa)
	PV07_02480	DUF1716 domain-containing protein. (614 aa)
	PV07_05997	Uncharacterized protein. (561 aa)
	PV07_05949	Uncharacterized protein. (455 aa)
	PV07_05005	Uncharacterized protein. (307 aa)
	PV07_05421	Uncharacterized protein. (303 aa)
	PV07_05326	Uncharacterized protein. (604 aa)
	PV07_08127	Pre-mRNA-splicing factor slt11. (380 aa)
	PV07_07194	Uncharacterized protein. (324 aa)
	PV07_07643	Uncharacterized protein. (449 aa)
	PV07_07029	Uncharacterized protein. (215 aa)
	PV07_06624	PWI domain-containing protein. (490 aa)
	PV07_07116	Uncharacterized protein. (402 aa)
	PV07_09281	Uncharacterized protein. (617 aa)
	PV07_09232	Uncharacterized protein. (158 aa)
	PV07_09174	RRM domain-containing protein. (154 aa)
	PV07_09118	G-patch domain-containing protein. (665 aa)
	PV07_06447	Uncharacterized protein. (665 aa)
	PV07_08875	Uncharacterized protein. (561 aa)
	PV07_08502	Sde2_N_Ubi domain-containing protein. (342 aa)
	PV07_08389	Glycerol kinase; Belongs to the FGGY kinase family. (520 aa)
	PV07_10718	Uncharacterized protein. (265 aa)
	PV07_08588	Uncharacterized protein. (537 aa)
	PV07_11947	Uncharacterized protein; Belongs to the cytochrome P450 family. (516 aa)
	PV07_10194	Uncharacterized protein. (495 aa)
	PV07_11903	Uncharacterized protein. (594 aa)
	PV07_11712	Tr-type G domain-containing protein. (982 aa)
	PV07_10020	Uncharacterized protein; Belongs to the cytochrome P450 family. (511 aa)
	PV07_09956	Uncharacterized protein. (802 aa)
	PV07_09723	PSP domain-containing protein. (581 aa)
	PV07_11921	FAD-binding PCMH-type domain-containing protein; Belongs to the oxygen-dependent FAD-linked oxidoreductase family. (497 aa)
	PV07_10974	Uncharacterized protein. (839 aa)
	PV07_12359	Uncharacterized protein. (533 aa)
	PV07_11069	Uncharacterized protein. (449 aa)
	PV07_11024	RRM domain-containing protein. (478 aa)
	PV07_12454	Uncharacterized protein. (310 aa)
	PV07_02085	Uncharacterized protein. (331 aa)
	PV07_01682	Sm domain-containing protein. (136 aa)
	PV07_00901	Uncharacterized protein. (248 aa)
	PV07_00150	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43. (765 aa)
	PV07_00076	UBIQUITIN_CONJUGAT_2 domain-containing protein. (415 aa)
	PV07_04561	Uncharacterized protein. (2241 aa)
	PV07_03141	Uncharacterized protein. (681 aa)
	PV07_05507	WD_REPEATS_REGION domain-containing protein. (334 aa)
	PV07_05463	RRM domain-containing protein. (199 aa)
	PV07_08079	Uncharacterized protein. (283 aa)
	PV07_07495	Uncharacterized protein. (562 aa)
	PV07_07325	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (162 aa)
	PV07_07570	SF3b1 domain-containing protein. (1214 aa)
	PV07_02525	Uncharacterized protein. (1011 aa)
	PV07_11641	Uncharacterized protein. (480 aa)
	PV07_11737	Uncharacterized protein. (990 aa)
	PV07_12134	Matrin-type domain-containing protein. (542 aa)
	PV07_06473	Cwf21 domain-containing protein. (184 aa)
	PV07_10238	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (128 aa)
	PV07_01626	Uncharacterized protein. (547 aa)
	PV07_10465	Uncharacterized protein. (564 aa)
	PV07_10493	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (554 aa)
	PV07_09990	Uncharacterized protein. (706 aa)
	PV07_12360	Uncharacterized protein. (675 aa)
	PV07_02915	Uncharacterized protein. (771 aa)
	PV07_03494	Matrin-type domain-containing protein. (237 aa)
	PV07_03575	U1-type domain-containing protein. (300 aa)
	PV07_04259	Uncharacterized protein. (439 aa)
	PV07_00288	MFAP1 domain-containing protein. (295 aa)
	PV07_00976	Uncharacterized protein. (252 aa)
	PV07_01459	Uncharacterized protein. (567 aa)

Your Current Organism:

Cladophialophora immunda

NCBI taxonomy Id: 569365
Other names: C. immunda, CBS 834.96, Cladophialophora sp. CBS 834.96, Cladophialophora sp. HB-2008

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV07_00076	PV07_02915	A0A0D2B6I2	A0A0D1ZT28	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.408
PV07_00076	PV07_07212	A0A0D2B6I2	A0A0D2CV03	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.412
PV07_00076	PV07_07643	A0A0D2B6I2	A0A0D2CA69	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.412
PV07_00076	PV07_11024	A0A0D2B6I2	A0A0D2BUL2	UBIQUITIN_CONJUGAT_2 domain-containing protein.	RRM domain-containing protein.	0.412
PV07_00150	PV07_00222	A0A0D2B6Q4	A0A0D2CTW0	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.	Uncharacterized protein.	0.892
PV07_00150	PV07_00288	A0A0D2B6Q4	A0A0D1ZZ83	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.	MFAP1 domain-containing protein.	0.583
PV07_00150	PV07_00340	A0A0D2B6Q4	A0A0D2DCT3	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.	RRM domain-containing protein.	0.496
PV07_00150	PV07_00383	A0A0D2B6Q4	A0A0D2CQT0	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.	Uncharacterized protein.	0.909
PV07_00150	PV07_00385	A0A0D2B6Q4	A0A0D2CUM0	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.	Pre-mRNA-splicing factor syf1.	0.903
PV07_00150	PV07_00901	A0A0D2B6Q4	A0A0D2B911	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.	Uncharacterized protein.	0.972
PV07_00150	PV07_00976	A0A0D2B6Q4	A0A0D2A1B5	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.	Uncharacterized protein.	0.554
PV07_00150	PV07_01265	A0A0D2B6Q4	A0A0D2DFN2	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.	Uncharacterized protein.	0.541
PV07_00150	PV07_01459	A0A0D2B6Q4	A0A0D2A339	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.	Uncharacterized protein.	0.494
PV07_00150	PV07_01660	A0A0D2B6Q4	A0A0D2CUX9	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.	Pre-mRNA-splicing factor rse1.	0.883
PV07_00150	PV07_01911	A0A0D2B6Q4	A0A0D2CVS0	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.	WD_REPEATS_REGION domain-containing protein.	0.636
PV07_00150	PV07_02085	A0A0D2B6Q4	A0A0D2BCZ7	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.	Uncharacterized protein.	0.944
PV07_00150	PV07_02296	A0A0D2B6Q4	A0A0D2D073	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.	Uncharacterized protein.	0.929
PV07_00150	PV07_02480	A0A0D2B6Q4	A0A0D2CI22	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.	DUF1716 domain-containing protein.	0.410
PV07_00150	PV07_02765	A0A0D2B6Q4	A0A0D2CIX9	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.	Uncharacterized protein.	0.778
PV07_00150	PV07_02940	A0A0D2B6Q4	A0A0D2D6E1	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.	Pre-mRNA-splicing factor clf1.	0.925