85 items (Cladophialophora immunda) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV07_03280	TRASH domain-containing protein. (196 aa)
	PV07_04217	Uncharacterized protein; Belongs to the AAA ATPase family. (695 aa)
	PV07_04066	WD_REPEATS_REGION domain-containing protein. (1020 aa)
	PV07_10110	Zn(2)-C6 fungal-type domain-containing protein. (741 aa)
	PV07_10833	Uncharacterized protein; Belongs to the DEAD box helicase family. (525 aa)
	PV07_08463	Uncharacterized protein. (548 aa)
	PV07_09491	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (242 aa)
	PV07_06671	Uncharacterized protein. (204 aa)
	PV07_06675	Uncharacterized protein. (307 aa)
	PV07_06856	Protein MAK16; Belongs to the MAK16 family. (325 aa)
	PV07_07186	Uncharacterized protein. (1257 aa)
	PV07_07869	C2H2-type domain-containing protein. (118 aa)
	PV07_08180	Uncharacterized protein. (394 aa)
	PV07_05166	Uncharacterized protein. (280 aa)
	PV07_03725	Zn(2)-C6 fungal-type domain-containing protein. (755 aa)
	SPB1	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (834 aa)
	PV07_02019	Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family. (691 aa)
	PV07_02129	Uncharacterized protein; Belongs to the DEAD box helicase family. (523 aa)
	PV07_12481	CBF domain-containing protein. (293 aa)
	PV07_12325	Bms1-type G domain-containing protein. (861 aa)
	PV07_11988	RNA helicase. (635 aa)
	PV07_09685	Fungal_trans domain-containing protein. (644 aa)
	PV07_11476	Uncharacterized protein. (906 aa)
	PV07_09803	WD_REPEATS_REGION domain-containing protein. (443 aa)
	NAT10	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1110 aa)
	PV07_10357	Uncharacterized protein. (231 aa)
	PV07_08486	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (314 aa)
	PV07_08913	Ribosome biogenesis protein NSA2. (261 aa)
	PV07_10742	RRM domain-containing protein. (309 aa)
	PV07_10831	Uncharacterized protein. (280 aa)
	PV07_08846	Fungal_trans domain-containing protein. (716 aa)
	PV07_09527	Uncharacterized protein. (512 aa)
	PV07_09123	WD_REPEATS_REGION domain-containing protein. (559 aa)
	PV07_07044	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (744 aa)
	PV07_07733	RNA helicase. (626 aa)
	PV07_07995	U3 small nucleolar RNA-associated protein 22. (1150 aa)
	PV07_05088	RING-type domain-containing protein. (703 aa)
	PV07_05793	WD_REPEATS_REGION domain-containing protein. (601 aa)
	PV07_05940	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (260 aa)
	PV07_11330	Brix domain-containing protein. (385 aa)
	PV07_02437	Uncharacterized protein. (304 aa)
	PV07_03554	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (760 aa)
	PV07_00887	Uncharacterized protein. (318 aa)
	PV07_09362	WD_REPEATS_REGION domain-containing protein. (603 aa)
	PV07_00407	Uncharacterized protein. (1797 aa)
	PV07_03473	Zn(2)-C6 fungal-type domain-containing protein. (716 aa)
	PV07_03438	RRM domain-containing protein. (667 aa)
	PV07_01448	Uncharacterized protein. (683 aa)
	PV07_01305	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (287 aa)
	PV07_01037	Uncharacterized protein. (891 aa)
	PV07_00755	CBF domain-containing protein. (1066 aa)
	PV07_00455	Zn(2)-C6 fungal-type domain-containing protein. (704 aa)
	PV07_00082	ATP-dependent RNA helicase DBP10. (961 aa)
	PV07_03726	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (487 aa)
	PV07_02732	Uncharacterized protein. (822 aa)
	PV07_02660	Uncharacterized protein. (707 aa)
	PV07_05873	PINc domain-containing protein. (194 aa)
	PV07_05405	NUC153 domain-containing protein. (725 aa)
	PV07_04749	F-box domain-containing protein. (343 aa)
	PV07_01121	RNA helicase. (877 aa)
	PV07_02020	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (186 aa)
	PV07_01664	Uncharacterized protein. (1126 aa)
	PV07_07077	Uncharacterized protein. (473 aa)
	PV07_01358	Sas10 domain-containing protein. (587 aa)
	PV07_04566	18S rRNA biogenesis protein RCL1. (407 aa)
	PV07_04438	Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family. (533 aa)
	PV07_12321	Utp12 domain-containing protein. (962 aa)
	PV07_11406	RRM domain-containing protein. (528 aa)
	PV07_08876	DRIM domain-containing protein. (2599 aa)
	PV07_09264	Uncharacterized protein. (937 aa)
	PV07_07002	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (146 aa)
	PV07_07557	Uncharacterized protein. (692 aa)
	PV07_08277	Uncharacterized protein. (436 aa)
	PV07_04640	Brix domain-containing protein. (296 aa)
	PV07_04756	Brix domain-containing protein. (337 aa)
	PV07_05339	Zn(2)-C6 fungal-type domain-containing protein. (741 aa)
	PV07_06243	Uncharacterized protein. (202 aa)
	PV07_02749	AB hydrolase-1 domain-containing protein. (391 aa)
	PV07_02963	Uncharacterized protein. (285 aa)
	PV07_03970	WD_REPEATS_REGION domain-containing protein. (967 aa)
	PV07_04142	Uncharacterized protein. (399 aa)
	PV07_04586	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (336 aa)
	PV07_00501	RIO domain-containing protein. (383 aa)
	PV07_01297	F-box domain-containing protein. (1228 aa)
	PV07_01856	Uncharacterized protein. (329 aa)

Your Current Organism:

Cladophialophora immunda

NCBI taxonomy Id: 569365
Other names: C. immunda, CBS 834.96, Cladophialophora sp. CBS 834.96, Cladophialophora sp. HB-2008

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NAT10	PV07_00082	A0A0D2BZ39	A0A0D2DBW5	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	ATP-dependent RNA helicase DBP10.	0.863
NAT10	PV07_00407	A0A0D2BZ39	A0A0D2CQV0	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Uncharacterized protein.	0.994
NAT10	PV07_00501	A0A0D2BZ39	A0A0D1ZZT3	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	RIO domain-containing protein.	0.748
NAT10	PV07_00755	A0A0D2BZ39	A0A0D2DE32	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	CBF domain-containing protein.	0.883
NAT10	PV07_00887	A0A0D2BZ39	A0A0D2CSD4	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Uncharacterized protein.	0.742
NAT10	PV07_01037	A0A0D2BZ39	A0A0D2DEV6	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Uncharacterized protein.	0.679
NAT10	PV07_01121	A0A0D2BZ39	A0A0D2CWU4	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	RNA helicase.	0.872
NAT10	PV07_01305	A0A0D2BZ39	A0A0D2DFT3	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.979
NAT10	PV07_01358	A0A0D2BZ39	A0A0D2CTV0	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Sas10 domain-containing protein.	0.989
NAT10	PV07_01448	A0A0D2BZ39	A0A0D2DG27	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Uncharacterized protein.	0.876
NAT10	PV07_01664	A0A0D2BZ39	A0A0D2CUY5	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Uncharacterized protein.	0.991
NAT10	PV07_02019	A0A0D2BZ39	A0A0D2BCR5	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family.	0.876
NAT10	PV07_02020	A0A0D2BZ39	A0A0D2CW36	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.697
NAT10	PV07_02129	A0A0D2BZ39	A0A0D2BD51	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.766
NAT10	PV07_02437	A0A0D2BZ39	A0A0D2CHY4	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Uncharacterized protein.	0.990
NAT10	PV07_02660	A0A0D2BZ39	A0A0D2D5P3	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Uncharacterized protein.	0.918
NAT10	PV07_02732	A0A0D2BZ39	A0A0D2D5V8	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Uncharacterized protein.	0.582
NAT10	PV07_02749	A0A0D2BZ39	A0A0D1ZSP8	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	AB hydrolase-1 domain-containing protein.	0.497
NAT10	PV07_02963	A0A0D2BZ39	A0A0D1ZT80	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Uncharacterized protein.	0.863
NAT10	PV07_03280	A0A0D2BZ39	A0A0D2CNQ4	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	TRASH domain-containing protein.	0.687