132 items (Cladophialophora immunda) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV07_06371	Uncharacterized protein. (222 aa)
	PV07_05940	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (260 aa)
	PV07_05863	Uncharacterized protein. (347 aa)
	PV07_05793	WD_REPEATS_REGION domain-containing protein. (601 aa)
	PV07_05522	WD_REPEATS_REGION domain-containing protein. (899 aa)
	PV07_05108	Methyltransf_25 domain-containing protein. (228 aa)
	PV07_07995	U3 small nucleolar RNA-associated protein 22. (1150 aa)
	PV07_07827	40S ribosomal protein S20. (116 aa)
	PV07_07715	S1 motif domain-containing protein. (349 aa)
	PV07_07204	RNase_PH domain-containing protein. (362 aa)
	PV07_07456	WD_REPEATS_REGION domain-containing protein. (533 aa)
	PV07_07124	RIX1 domain-containing protein. (771 aa)
	PV07_07044	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (744 aa)
	PV07_07036	Uncharacterized protein. (159 aa)
	RPS1	40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family. (257 aa)
	PV07_09123	WD_REPEATS_REGION domain-containing protein. (559 aa)
	PV07_09366	WD_REPEATS_REGION domain-containing protein. (998 aa)
	PV07_10747	Uncharacterized protein. (552 aa)
	PV07_10032	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (193 aa)
	RPS0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (285 aa)
	ERB1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (786 aa)
	PV07_10067	Uncharacterized protein. (713 aa)
	PV07_09827	Uncharacterized protein. (390 aa)
	PV07_09803	WD_REPEATS_REGION domain-containing protein. (443 aa)
	PV07_11481	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (153 aa)
	PV07_11476	Uncharacterized protein. (906 aa)
	PV07_11231	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	PV07_11432	Uncharacterized protein. (526 aa)
	PV07_12385	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (212 aa)
	PV07_12325	Bms1-type G domain-containing protein. (861 aa)
	PV07_12481	CBF domain-containing protein. (293 aa)
	PV07_12555	Uncharacterized protein. (393 aa)
	PV07_02289	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (203 aa)
	PV07_00712	Uncharacterized protein. (278 aa)
	SPB1	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (834 aa)
	PV07_04604	Nop domain-containing protein. (519 aa)
	PV07_03677	Uncharacterized protein. (1069 aa)
	PV07_03269	WD_REPEATS_REGION domain-containing protein. (536 aa)
	PV07_03216	Uncharacterized protein. (440 aa)
	PV07_11888	Nop domain-containing protein. (653 aa)
	PV07_02421	RNase_PH domain-containing protein. (258 aa)
	PV07_03554	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (760 aa)
	PV07_03850	40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (215 aa)
	PV07_04066	WD_REPEATS_REGION domain-containing protein. (1020 aa)
	PV07_04098	40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	PV07_10602	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (240 aa)
	PV07_10783	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (264 aa)
	PV07_10798	Uncharacterized protein. (263 aa)
	PV07_03302	Uncharacterized protein. (734 aa)
	PV07_00407	Uncharacterized protein. (1797 aa)
	PV07_09163	RNase_PH domain-containing protein. (359 aa)
	PV07_09362	WD_REPEATS_REGION domain-containing protein. (603 aa)
	PV07_00713	RNase_PH domain-containing protein. (311 aa)
	PV07_09425	Pre-rRNA-processing protein PNO1. (267 aa)
	PV07_09483	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (121 aa)
	PV07_09557	Uncharacterized protein. (170 aa)
	PV07_04566	18S rRNA biogenesis protein RCL1. (407 aa)
	PV07_01358	Sas10 domain-containing protein. (587 aa)
	PV07_06815	Ribosomal_L28e domain-containing protein. (152 aa)
	PV07_06874	Ipi1_N domain-containing protein. (330 aa)
	PV07_06879	ULP_PROTEASE domain-containing protein. (882 aa)
	PV07_00292	Uncharacterized protein. (283 aa)
	PV07_01471	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (161 aa)
	PV07_07077	Uncharacterized protein. (473 aa)
	PV07_01664	Uncharacterized protein. (1126 aa)
	PV07_01725	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (134 aa)
	PV07_02020	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (186 aa)
	PV07_02071	Bms1-type G domain-containing protein. (1176 aa)
	PV07_01051	Exonuclease domain-containing protein. (309 aa)
	PV07_07842	40S ribosomal protein S19. (155 aa)
	PV07_01256	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (126 aa)
	PV07_01488	rRNA 2'-O-methyltransferase fibrillarin. (317 aa)
	PV07_08324	40S ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family. (155 aa)
	PV07_02311	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (264 aa)
	PV07_05694	Uncharacterized protein. (291 aa)
	PV07_05873	PINc domain-containing protein. (194 aa)
	PV07_06255	WD_REPEATS_REGION domain-containing protein. (1002 aa)
	PV07_02999	KH_dom_type_1 domain-containing protein. (247 aa)
	PV07_02526	BP28CT domain-containing protein. (1904 aa)
	PV07_05876	40S ribosomal protein S28. (69 aa)
	PV07_05614	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (448 aa)
	PV07_08305	HRDC domain-containing protein. (847 aa)
	PV07_08180	Uncharacterized protein. (394 aa)
	PV07_07186	Uncharacterized protein. (1257 aa)
	PV07_06675	Uncharacterized protein. (307 aa)
	PV07_09408	Uncharacterized protein. (274 aa)
	PV07_10833	Uncharacterized protein; Belongs to the DEAD box helicase family. (525 aa)
	PV07_10710	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (152 aa)
	PV07_11980	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (1031 aa)
	PV07_11671	Uncharacterized protein. (360 aa)
	PV07_02375	S4 RNA-binding domain-containing protein. (430 aa)
	PV07_02241	Uncharacterized protein. (811 aa)
	PV07_01542	CP-type G domain-containing protein. (554 aa)
	PV07_01470	40S ribosomal protein S22, variant; Belongs to the universal ribosomal protein uS8 family. (130 aa)
	PV07_00501	RIO domain-containing protein. (383 aa)
	PV07_00337	Uncharacterized protein. (210 aa)
	PV07_00293	Uncharacterized protein. (367 aa)
	PV07_04586	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (336 aa)
	PV07_04142	Uncharacterized protein. (399 aa)
	PV07_02460	60S ribosomal protein L43-B. (92 aa)
	PV07_04096	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (143 aa)
	PV07_03970	WD_REPEATS_REGION domain-containing protein. (967 aa)
	PV07_03918	40S ribosomal protein S17. (150 aa)
	PV07_03676	Uncharacterized protein; Involved in ubiquitin-mediated protein degradation. Regulatory factor in the ubiquitin/proteasome pathway that controls the turnover of proteasome substrates. Targets proteasomes to the nucleus and facilitates the degradation of nuclear proteins. (301 aa)
	PV07_03255	Casein kinase I isoform delta; Belongs to the protein kinase superfamily. (388 aa)
	PV07_02963	Uncharacterized protein. (285 aa)
	PV07_05559	ULP_PROTEASE domain-containing protein. (1324 aa)
	PV07_04640	Brix domain-containing protein. (296 aa)
	PV07_08277	Uncharacterized protein. (436 aa)
	PV07_07584	CLP1_P domain-containing protein. (622 aa)
	PV07_07002	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (146 aa)
	PV07_06482	60S ribosomal protein L2-B. (254 aa)
	NOP7	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (674 aa)
	PV07_09264	Uncharacterized protein. (937 aa)
	YTM1	Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (467 aa)
	PV07_08876	DRIM domain-containing protein. (2599 aa)
	PV07_08747	Uncharacterized protein. (141 aa)
	PV07_08443	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (612 aa)
	PV07_10534	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (350 aa)
	PV07_09863	ATP-dependent rRNA helicase RRP3; Belongs to the DEAD box helicase family. (477 aa)
	PV07_12386	S10_plectin domain-containing protein. (164 aa)
	PV07_12321	Utp12 domain-containing protein. (962 aa)
	PV07_06323	Uncharacterized protein. (358 aa)
	PV07_03437	Uncharacterized protein. (492 aa)
	PV07_00598	Uncharacterized protein. (399 aa)
	PV07_01305	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (287 aa)
	PV07_01448	Uncharacterized protein. (683 aa)
	PV07_01629	Uncharacterized protein. (117 aa)
	cnxG	Molybdopterin synthase sulfur carrier subunit; Acts as a sulfur carrier required for molybdopterin biosynthesis. Component of the molybdopterin synthase complex that catalyzes the conversion of precursor Z into molybdopterin by mediating the incorporation of 2 sulfur atoms into precursor Z to generate a dithiolene group. In the complex, serves as sulfur donor by being thiocarboxylated (-COSH) at its C-terminus by UBA4. After interaction with MOCS2B, the sulfur is then transferred to precursor Z to form molybdopterin. (146 aa)
	PV07_11762	Ribosomal RNA small subunit methyltransferase NEP1. (260 aa)
	PV07_06010	40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family. (162 aa)
	PV07_02437	Uncharacterized protein. (304 aa)

Your Current Organism:

Cladophialophora immunda

NCBI taxonomy Id: 569365
Other names: C. immunda, CBS 834.96, Cladophialophora sp. CBS 834.96, Cladophialophora sp. HB-2008

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ERB1	NOP7	A0A0D2BZ12	A0A0D1ZFF9	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.999
ERB1	PV07_00292	A0A0D2BZ12	A0A0D2CU72	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.801
ERB1	PV07_00293	A0A0D2BZ12	A0A0D1ZZ88	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.798
ERB1	PV07_00407	A0A0D2BZ12	A0A0D2CQV0	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.940
ERB1	PV07_00598	A0A0D2BZ12	A0A0D2DDI4	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.997
ERB1	PV07_01051	A0A0D2BZ12	A0A0D2CWI6	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Exonuclease domain-containing protein.	0.576
ERB1	PV07_01256	A0A0D2BZ12	A0A0D2CXB4	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.831
ERB1	PV07_01305	A0A0D2BZ12	A0A0D2DFT3	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.450
ERB1	PV07_01358	A0A0D2BZ12	A0A0D2CTV0	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Sas10 domain-containing protein.	0.796
ERB1	PV07_01448	A0A0D2BZ12	A0A0D2DG27	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.875
ERB1	PV07_01488	A0A0D2BZ12	A0A0D2CXU2	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	rRNA 2'-O-methyltransferase fibrillarin.	0.932
ERB1	PV07_01542	A0A0D2BZ12	A0A0D2A3C0	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	CP-type G domain-containing protein.	0.998
ERB1	PV07_01629	A0A0D2BZ12	A0A0D2DGJ4	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.934
ERB1	PV07_01664	A0A0D2BZ12	A0A0D2CUY5	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.879
ERB1	PV07_02020	A0A0D2BZ12	A0A0D2CW36	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.992
ERB1	PV07_02071	A0A0D2BZ12	A0A0D2CW98	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Bms1-type G domain-containing protein.	0.881
ERB1	PV07_02241	A0A0D2BZ12	A0A0D2A5E1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.922
ERB1	PV07_02437	A0A0D2BZ12	A0A0D2CHY4	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.553
ERB1	PV07_02460	A0A0D2BZ12	A0A0D2CI05	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	60S ribosomal protein L43-B.	0.780
ERB1	PV07_02526	A0A0D2BZ12	A0A0D2AZW0	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	BP28CT domain-containing protein.	0.917