STRINGSTRING
PV07_04042 PV07_04042 PV07_12223 PV07_12223 PV07_11352 PV07_11352 PV07_08541 PV07_08541 PV07_05589 PV07_05589 PV07_04152 PV07_04152 PV07_00066 PV07_00066 PV07_12132 PV07_12132 FEN1 FEN1 PV07_11588 PV07_11588 PV07_02745 PV07_02745 PV07_02920 PV07_02920 PV07_00284 PV07_00284 PV07_10101 PV07_10101 PV07_11829 PV07_11829 PV07_08616 PV07_08616 PV07_10439 PV07_10439 PV07_09384 PV07_09384 PV07_06692 PV07_06692 PV07_07742 PV07_07742 PV07_05433 PV07_05433 PV07_05776 PV07_05776 PV07_10514 PV07_10514 PV07_08539 PV07_08539 PV07_03566 PV07_03566 PV07_03964 PV07_03964 PV07_00498 PV07_00498 PV07_01036 PV07_01036 PV07_00182 PV07_00182 PV07_00371 PV07_00371
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PV07_04042DNA polymerase. (1451 aa)
PV07_12223Replication factor C subunit 5. (354 aa)
PV07_11352AAA domain-containing protein. (407 aa)
PV07_08541Vezatin domain-containing protein. (591 aa)
PV07_05589AAA domain-containing protein. (408 aa)
PV07_04152SnoaL-like domain-containing protein. (160 aa)
PV07_00066DNA polymerase. (1107 aa)
PV07_12132Replication factor C subunit 1. (1092 aa)
FEN1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (405 aa)
PV07_11588Uncharacterized protein. (559 aa)
PV07_02745DNA ligase. (871 aa)
PV07_02920Uncharacterized protein. (148 aa)
PV07_00284DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (651 aa)
PV07_10101Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (606 aa)
PV07_11829Uncharacterized protein. (832 aa)
PV07_08616Uncharacterized protein. (383 aa)
PV07_10439Zds_C domain-containing protein. (924 aa)
PV07_09384Uncharacterized protein. (503 aa)
PV07_06692Replication factor C subunit 4. (352 aa)
PV07_07742DNA primase; Belongs to the eukaryotic-type primase small subunit family. (530 aa)
PV07_05433DNA_LIGASE_A3 domain-containing protein; Belongs to the ATP-dependent DNA ligase family. (919 aa)
PV07_05776Uncharacterized protein. (444 aa)
PV07_10514CCHC-type domain-containing protein. (318 aa)
PV07_08539Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (259 aa)
PV07_03566Uncharacterized protein. (1693 aa)
PV07_03964DNA primase large subunit; DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication; Belongs to the eukaryotic-type primase large subunit family. (503 aa)
PV07_00498Uncharacterized protein. (131 aa)
PV07_01036ATPase_AAA_core domain-containing protein. (1107 aa)
PV07_00182Uncharacterized protein. (232 aa)
PV07_00371Uncharacterized protein. (509 aa)
Your Current Organism:
Cladophialophora immunda
NCBI taxonomy Id: 569365
Other names: C. immunda, CBS 834.96, Cladophialophora sp. CBS 834.96, Cladophialophora sp. HB-2008
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