140 items (Cladophialophora immunda) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV07_03255	Casein kinase I isoform delta; Belongs to the protein kinase superfamily. (388 aa)
	PV07_03676	Uncharacterized protein; Involved in ubiquitin-mediated protein degradation. Regulatory factor in the ubiquitin/proteasome pathway that controls the turnover of proteasome substrates. Targets proteasomes to the nucleus and facilitates the degradation of nuclear proteins. (301 aa)
	PV07_03918	40S ribosomal protein S17. (150 aa)
	PV07_03970	WD_REPEATS_REGION domain-containing protein. (967 aa)
	PV07_04096	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (143 aa)
	PV07_04142	Uncharacterized protein. (399 aa)
	PV07_04586	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (336 aa)
	PV07_00293	Uncharacterized protein. (367 aa)
	PV07_00337	Uncharacterized protein. (210 aa)
	PV07_00501	RIO domain-containing protein. (383 aa)
	PV07_01470	40S ribosomal protein S22, variant; Belongs to the universal ribosomal protein uS8 family. (130 aa)
	PV07_01542	CP-type G domain-containing protein. (554 aa)
	PV07_02241	Uncharacterized protein. (811 aa)
	PV07_02375	S4 RNA-binding domain-containing protein. (430 aa)
	PV07_11671	Uncharacterized protein. (360 aa)
	PV07_11980	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (1031 aa)
	PV07_10710	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (152 aa)
	PV07_10833	Uncharacterized protein; Belongs to the DEAD box helicase family. (525 aa)
	PV07_09408	Uncharacterized protein. (274 aa)
	PV07_06675	Uncharacterized protein. (307 aa)
	PV07_07186	Uncharacterized protein. (1257 aa)
	PV07_08180	Uncharacterized protein. (394 aa)
	PV07_08305	HRDC domain-containing protein. (847 aa)
	PV07_05413	FtsJ domain-containing protein. (362 aa)
	PV07_12555	Uncharacterized protein. (393 aa)
	cnxG	Molybdopterin synthase sulfur carrier subunit; Acts as a sulfur carrier required for molybdopterin biosynthesis. Component of the molybdopterin synthase complex that catalyzes the conversion of precursor Z into molybdopterin by mediating the incorporation of 2 sulfur atoms into precursor Z to generate a dithiolene group. In the complex, serves as sulfur donor by being thiocarboxylated (-COSH) at its C-terminus by UBA4. After interaction with MOCS2B, the sulfur is then transferred to precursor Z to form molybdopterin. (146 aa)
	PV07_01629	Uncharacterized protein. (117 aa)
	PV07_01448	Uncharacterized protein. (683 aa)
	PV07_01305	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (287 aa)
	PV07_00598	Uncharacterized protein. (399 aa)
	PV07_03437	Uncharacterized protein. (492 aa)
	PV07_06323	Uncharacterized protein. (358 aa)
	PV07_06255	WD_REPEATS_REGION domain-containing protein. (1002 aa)
	PV07_05873	PINc domain-containing protein. (194 aa)
	PV07_05694	Uncharacterized protein. (291 aa)
	PV07_02311	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (264 aa)
	PV07_08324	40S ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family. (155 aa)
	PV07_01488	rRNA 2'-O-methyltransferase fibrillarin. (317 aa)
	PV07_01256	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (126 aa)
	PV07_07842	40S ribosomal protein S19. (155 aa)
	TSR3	Ribosome biogenesis protein TSR3; Ribosome biogenesis protein required for processing 35S pre- rRNA at site D; Belongs to the TSR3 family. (399 aa)
	PV07_01051	Exonuclease domain-containing protein. (309 aa)
	PV07_02071	Bms1-type G domain-containing protein. (1176 aa)
	PV07_02020	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (186 aa)
	PV07_01725	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (134 aa)
	PV07_01664	Uncharacterized protein. (1126 aa)
	PV07_07077	Uncharacterized protein. (473 aa)
	PV07_01471	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (161 aa)
	PV07_00292	Uncharacterized protein. (283 aa)
	PV07_06879	ULP_PROTEASE domain-containing protein. (882 aa)
	PV07_06874	Ipi1_N domain-containing protein. (330 aa)
	PV07_06815	Ribosomal_L28e domain-containing protein. (152 aa)
	PV07_01358	Sas10 domain-containing protein. (587 aa)
	PV07_04566	18S rRNA biogenesis protein RCL1. (407 aa)
	PV07_09557	Uncharacterized protein. (170 aa)
	PV07_09483	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (121 aa)
	PV07_09425	Pre-rRNA-processing protein PNO1. (267 aa)
	PV07_00713	RNase_PH domain-containing protein. (311 aa)
	PV07_09362	WD_REPEATS_REGION domain-containing protein. (603 aa)
	PV07_09163	RNase_PH domain-containing protein. (359 aa)
	PV07_00407	Uncharacterized protein. (1797 aa)
	PV07_03302	Uncharacterized protein. (734 aa)
	PV07_10798	Uncharacterized protein. (263 aa)
	PV07_10783	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (264 aa)
	PV07_10602	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (240 aa)
	PV07_04098	40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	PV07_04066	WD_REPEATS_REGION domain-containing protein. (1020 aa)
	PV07_03850	40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (215 aa)
	PV07_02786	Uncharacterized protein. (1041 aa)
	PV07_03554	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (760 aa)
	PV07_02421	RNase_PH domain-containing protein. (258 aa)
	PV07_11888	Nop domain-containing protein. (653 aa)
	PV07_06010	40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family. (162 aa)
	PV07_11762	Ribosomal RNA small subunit methyltransferase NEP1. (260 aa)
	PV07_02460	60S ribosomal protein L43-B. (92 aa)
	PV07_02437	Uncharacterized protein. (304 aa)
	PV07_06371	Uncharacterized protein. (222 aa)
	PV07_05940	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (260 aa)
	PV07_05863	Uncharacterized protein. (347 aa)
	PV07_05793	WD_REPEATS_REGION domain-containing protein. (601 aa)
	PV07_05522	WD_REPEATS_REGION domain-containing protein. (899 aa)
	PV07_05108	Methyltransf_25 domain-containing protein. (228 aa)
	PV07_07995	U3 small nucleolar RNA-associated protein 22. (1150 aa)
	PV07_07827	40S ribosomal protein S20. (116 aa)
	PV07_07715	S1 motif domain-containing protein. (349 aa)
	PV07_07687	THUMP domain-containing protein. (334 aa)
	PV07_07204	RNase_PH domain-containing protein. (362 aa)
	PV07_07544	SpoU_methylase domain-containing protein. (463 aa)
	PV07_07456	WD_REPEATS_REGION domain-containing protein. (533 aa)
	PV07_07124	RIX1 domain-containing protein. (771 aa)
	PV07_07044	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (744 aa)
	PV07_07036	Uncharacterized protein. (159 aa)
	RPS1	40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family. (257 aa)
	PV07_09123	WD_REPEATS_REGION domain-containing protein. (559 aa)
	PV07_09366	WD_REPEATS_REGION domain-containing protein. (998 aa)
	PV07_10747	Uncharacterized protein. (552 aa)
	PV07_10032	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (193 aa)
	RPS0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (285 aa)
	NAT10	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1110 aa)
	ERB1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (786 aa)
	PV07_10067	Uncharacterized protein. (713 aa)
	PV07_09827	Uncharacterized protein. (390 aa)
	PV07_09803	WD_REPEATS_REGION domain-containing protein. (443 aa)
	PV07_11481	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (153 aa)
	PV07_11476	Uncharacterized protein. (906 aa)
	PV07_11231	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	PV07_11432	Uncharacterized protein. (526 aa)
	PV07_12385	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (212 aa)
	PV07_12325	Bms1-type G domain-containing protein. (861 aa)
	PV07_12481	CBF domain-containing protein. (293 aa)
	PV07_12449	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (390 aa)
	PV07_02289	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (203 aa)
	PV07_00712	Uncharacterized protein. (278 aa)
	SPB1	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (834 aa)
	PV07_04604	Nop domain-containing protein. (519 aa)
	PV07_03677	Uncharacterized protein. (1069 aa)
	PV07_03269	WD_REPEATS_REGION domain-containing protein. (536 aa)
	PV07_03216	Uncharacterized protein. (440 aa)
	PV07_02999	KH_dom_type_1 domain-containing protein. (247 aa)
	PV07_02526	BP28CT domain-containing protein. (1904 aa)
	PV07_05876	40S ribosomal protein S28. (69 aa)
	PV07_05614	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (448 aa)
	PV07_12321	Utp12 domain-containing protein. (962 aa)
	PV07_12386	S10_plectin domain-containing protein. (164 aa)
	PV07_09863	ATP-dependent rRNA helicase RRP3; Belongs to the DEAD box helicase family. (477 aa)
	PV07_10534	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (350 aa)
	PV07_08443	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (612 aa)
	PV07_08747	Uncharacterized protein. (141 aa)
	PV07_08876	DRIM domain-containing protein. (2599 aa)
	YTM1	Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (467 aa)
	PV07_09264	Uncharacterized protein. (937 aa)
	NOP7	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (674 aa)
	PV07_06482	60S ribosomal protein L2-B. (254 aa)
	PV07_07002	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (146 aa)
	PV07_07584	CLP1_P domain-containing protein. (622 aa)
	PV07_08277	Uncharacterized protein. (436 aa)
	PV07_04640	Brix domain-containing protein. (296 aa)
	PV07_05414	Uncharacterized protein. (543 aa)
	PV07_05559	ULP_PROTEASE domain-containing protein. (1324 aa)
	PV07_02963	Uncharacterized protein. (285 aa)

Your Current Organism:

Cladophialophora immunda

NCBI taxonomy Id: 569365
Other names: C. immunda, CBS 834.96, Cladophialophora sp. CBS 834.96, Cladophialophora sp. HB-2008

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ERB1	NAT10	A0A0D2BZ12	A0A0D2BZ39	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.887
ERB1	NOP7	A0A0D2BZ12	A0A0D1ZFF9	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.999
ERB1	PV07_00292	A0A0D2BZ12	A0A0D2CU72	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.801
ERB1	PV07_00293	A0A0D2BZ12	A0A0D1ZZ88	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.798
ERB1	PV07_00407	A0A0D2BZ12	A0A0D2CQV0	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.940
ERB1	PV07_00598	A0A0D2BZ12	A0A0D2DDI4	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.997
ERB1	PV07_01051	A0A0D2BZ12	A0A0D2CWI6	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Exonuclease domain-containing protein.	0.576
ERB1	PV07_01256	A0A0D2BZ12	A0A0D2CXB4	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.831
ERB1	PV07_01305	A0A0D2BZ12	A0A0D2DFT3	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.450
ERB1	PV07_01358	A0A0D2BZ12	A0A0D2CTV0	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Sas10 domain-containing protein.	0.796
ERB1	PV07_01448	A0A0D2BZ12	A0A0D2DG27	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.875
ERB1	PV07_01488	A0A0D2BZ12	A0A0D2CXU2	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	rRNA 2'-O-methyltransferase fibrillarin.	0.932
ERB1	PV07_01542	A0A0D2BZ12	A0A0D2A3C0	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	CP-type G domain-containing protein.	0.998
ERB1	PV07_01629	A0A0D2BZ12	A0A0D2DGJ4	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.934
ERB1	PV07_01664	A0A0D2BZ12	A0A0D2CUY5	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.879
ERB1	PV07_02020	A0A0D2BZ12	A0A0D2CW36	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.992
ERB1	PV07_02071	A0A0D2BZ12	A0A0D2CW98	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Bms1-type G domain-containing protein.	0.881
ERB1	PV07_02241	A0A0D2BZ12	A0A0D2A5E1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.922
ERB1	PV07_02437	A0A0D2BZ12	A0A0D2CHY4	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.553
ERB1	PV07_02460	A0A0D2BZ12	A0A0D2CI05	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	60S ribosomal protein L43-B.	0.780