8 items (Cladophialophora immunda) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV07_07868	Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family. (748 aa)
	PV07_09673	Uncharacterized protein. (1453 aa)
	PV07_09275	Uncharacterized protein. (696 aa)
	PV07_08933	Uncharacterized protein. (833 aa)
	PV07_03403	Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family. (809 aa)
	PV07_06788	Homoaconitase, mitochondrial; Catalyzes the reversible hydration of cis-homoaconitate to (2R,3S)-homoisocitrate, a step in the alpha-aminoadipate pathway for lysine biosynthesis. (804 aa)
	PV07_04270	3-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. (772 aa)
	PV07_09899	Uncharacterized protein. (831 aa)

Your Current Organism:

Cladophialophora immunda

NCBI taxonomy Id: 569365
Other names: C. immunda, CBS 834.96, Cladophialophora sp. CBS 834.96, Cladophialophora sp. HB-2008

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV07_03403	PV07_04270	A0A0D1ZUK3	A0A0D2CRZ6	Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.	3-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.	0.629
PV07_03403	PV07_06788	A0A0D1ZUK3	A0A0D1ZGL7	Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.	Homoaconitase, mitochondrial; Catalyzes the reversible hydration of cis-homoaconitate to (2R,3S)-homoisocitrate, a step in the alpha-aminoadipate pathway for lysine biosynthesis.	0.906
PV07_03403	PV07_07868	A0A0D1ZUK3	A0A0D1ZJL2	Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.	Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.	0.927
PV07_04270	PV07_03403	A0A0D2CRZ6	A0A0D1ZUK3	3-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.	Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.	0.629
PV07_04270	PV07_06788	A0A0D2CRZ6	A0A0D1ZGL7	3-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.	Homoaconitase, mitochondrial; Catalyzes the reversible hydration of cis-homoaconitate to (2R,3S)-homoisocitrate, a step in the alpha-aminoadipate pathway for lysine biosynthesis.	0.640
PV07_04270	PV07_07868	A0A0D2CRZ6	A0A0D1ZJL2	3-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.	Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.	0.690
PV07_04270	PV07_08933	A0A0D2CRZ6	A0A0D2C3I1	3-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.	Uncharacterized protein.	0.629
PV07_04270	PV07_09275	A0A0D2CRZ6	A0A0D2C4Q6	3-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.	Uncharacterized protein.	0.629
PV07_04270	PV07_09673	A0A0D2CRZ6	A0A0D1ZFJ3	3-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.	Uncharacterized protein.	0.629
PV07_04270	PV07_09899	A0A0D2CRZ6	A0A0D2CKU4	3-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.	Uncharacterized protein.	0.629
PV07_06788	PV07_03403	A0A0D1ZGL7	A0A0D1ZUK3	Homoaconitase, mitochondrial; Catalyzes the reversible hydration of cis-homoaconitate to (2R,3S)-homoisocitrate, a step in the alpha-aminoadipate pathway for lysine biosynthesis.	Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.	0.906
PV07_06788	PV07_04270	A0A0D1ZGL7	A0A0D2CRZ6	Homoaconitase, mitochondrial; Catalyzes the reversible hydration of cis-homoaconitate to (2R,3S)-homoisocitrate, a step in the alpha-aminoadipate pathway for lysine biosynthesis.	3-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.	0.640
PV07_07868	PV07_03403	A0A0D1ZJL2	A0A0D1ZUK3	Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.	Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.	0.927
PV07_07868	PV07_04270	A0A0D1ZJL2	A0A0D2CRZ6	Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.	3-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.	0.690
PV07_08933	PV07_04270	A0A0D2C3I1	A0A0D2CRZ6	Uncharacterized protein.	3-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.	0.629
PV07_09275	PV07_04270	A0A0D2C4Q6	A0A0D2CRZ6	Uncharacterized protein.	3-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.	0.629
PV07_09673	PV07_04270	A0A0D1ZFJ3	A0A0D2CRZ6	Uncharacterized protein.	3-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.	0.629
PV07_09899	PV07_04270	A0A0D2CKU4	A0A0D2CRZ6	Uncharacterized protein.	3-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.	0.629