(12 nodes) Vesicle transport v-SNARE, N-terminal, and Target SNARE coiled-coil homology domain network (Trichomonas vaginalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TVAG_076330	Uncharacterized protein. (284 aa)
	TVAG_295050	t-SNARE coiled-coil homology domain-containing protein. (239 aa)
	TVAG_467910	Uncharacterized protein. (226 aa)
	TVAG_128990	Uncharacterized protein. (202 aa)
	TVAG_446910	t-SNARE coiled-coil homology domain-containing protein. (232 aa)
	TVAG_363990	t-SNARE coiled-coil homology domain-containing protein. (289 aa)
	TVAG_487680	Uncharacterized protein. (223 aa)
	TVAG_100030	t-SNARE coiled-coil homology domain-containing protein. (238 aa)
	TVAG_161630	t-SNARE coiled-coil homology domain-containing protein. (245 aa)
	TVAG_159550	Uncharacterized protein. (269 aa)
	TVAG_256540	t-SNARE coiled-coil homology domain-containing protein. (222 aa)
	TVAG_084340	V-SNARE domain-containing protein. (207 aa)

Your Current Organism:

Trichomonas vaginalis

NCBI taxonomy Id: 5722
Other names: T. vaginalis, Tritrichomonas vaginalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TVAG_076330	TVAG_084340	A2D9N0	A2G6F9	Uncharacterized protein.	V-SNARE domain-containing protein.	0.540
TVAG_076330	TVAG_100030	A2D9N0	A2EK70	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.540
TVAG_076330	TVAG_128990	A2D9N0	A2E4F0	Uncharacterized protein.	Uncharacterized protein.	0.540
TVAG_076330	TVAG_159550	A2D9N0	A2F5B0	Uncharacterized protein.	Uncharacterized protein.	0.540
TVAG_076330	TVAG_161630	A2D9N0	A2EUN6	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.540
TVAG_076330	TVAG_256540	A2D9N0	A2FHB6	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.540
TVAG_076330	TVAG_295050	A2D9N0	A2DL62	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.540
TVAG_076330	TVAG_363990	A2D9N0	A2EDW8	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.540
TVAG_076330	TVAG_446910	A2D9N0	A2E8Q0	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.540
TVAG_076330	TVAG_467910	A2D9N0	A2E0N1	Uncharacterized protein.	Uncharacterized protein.	0.540
TVAG_076330	TVAG_487680	A2D9N0	A2EFP6	Uncharacterized protein.	Uncharacterized protein.	0.540
TVAG_084340	TVAG_076330	A2G6F9	A2D9N0	V-SNARE domain-containing protein.	Uncharacterized protein.	0.540
TVAG_084340	TVAG_100030	A2G6F9	A2EK70	V-SNARE domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.540
TVAG_084340	TVAG_128990	A2G6F9	A2E4F0	V-SNARE domain-containing protein.	Uncharacterized protein.	0.540
TVAG_084340	TVAG_159550	A2G6F9	A2F5B0	V-SNARE domain-containing protein.	Uncharacterized protein.	0.540
TVAG_084340	TVAG_161630	A2G6F9	A2EUN6	V-SNARE domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.540
TVAG_084340	TVAG_256540	A2G6F9	A2FHB6	V-SNARE domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.540
TVAG_084340	TVAG_295050	A2G6F9	A2DL62	V-SNARE domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.540
TVAG_084340	TVAG_363990	A2G6F9	A2EDW8	V-SNARE domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.540
TVAG_084340	TVAG_446910	A2G6F9	A2E8Q0	V-SNARE domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.540