(21 nodes) SAGA-type complex, and Histone acetyltransferase GCN5 network (Trichomonas vaginalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TVAG_456490	Clan CA, family C19, ubiquitin hydrolase-like cysteine peptidase. (434 aa)
	TVAG_198210	Myb-like DNA-binding domain containing protein. (553 aa)
	TVAG_225620	Uncharacterized protein. (479 aa)
	TVAG_486940	Myb-like DNA-binding domain containing protein. (419 aa)
	TVAG_491320	TAF6_C domain-containing protein. (398 aa)
	TVAG_164270	SANT domain-containing protein. (401 aa)
	TVAG_127940	Myb-like DNA-binding domain containing protein. (434 aa)
	TVAG_308330	Acetyltransferase, GNAT family protein. (359 aa)
	TVAG_497120	Acetyltransferase, GNAT family protein. (395 aa)
	TVAG_149520	Uncharacterized protein. (127 aa)
	TVAG_065680	Transducin, putative. (492 aa)
	TVAG_016540	Uncharacterized protein. (286 aa)
	TVAG_440750	WD repeat protein, putative. (466 aa)
	TVAG_206920	WD_REPEATS_REGION domain-containing protein. (610 aa)
	TVAG_316930	TAF domain-containing protein. (407 aa)
	TVAG_168460	Uncharacterized protein. (706 aa)
	TVAG_014960	TAF6_C domain-containing protein. (393 aa)
	TVAG_355640	SGF29 C-terminal domain-containing protein. (270 aa)
	TVAG_091650	Acetyltransferase, GNAT family protein. (366 aa)
	TVAG_324780	Acetyltransferase, GNAT family protein. (404 aa)
	TVAG_121360	Uncharacterized protein. (119 aa)

Your Current Organism:

Trichomonas vaginalis

NCBI taxonomy Id: 5722
Other names: T. vaginalis, Tritrichomonas vaginalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TVAG_014960	TVAG_016540	A2FG65	A2EQZ2	TAF6_C domain-containing protein.	Uncharacterized protein.	0.798
TVAG_014960	TVAG_065680	A2FG65	A2ELX2	TAF6_C domain-containing protein.	Transducin, putative.	0.801
TVAG_014960	TVAG_091650	A2FG65	A2FYQ3	TAF6_C domain-containing protein.	Acetyltransferase, GNAT family protein.	0.772
TVAG_014960	TVAG_121360	A2FG65	A2G0V6	TAF6_C domain-containing protein.	Uncharacterized protein.	0.952
TVAG_014960	TVAG_127940	A2FG65	A2EBF5	TAF6_C domain-containing protein.	Myb-like DNA-binding domain containing protein.	0.798
TVAG_014960	TVAG_149520	A2FG65	A2ELL9	TAF6_C domain-containing protein.	Uncharacterized protein.	0.962
TVAG_014960	TVAG_164270	A2FG65	A2E1W8	TAF6_C domain-containing protein.	SANT domain-containing protein.	0.798
TVAG_014960	TVAG_168460	A2FG65	A2F2E9	TAF6_C domain-containing protein.	Uncharacterized protein.	0.771
TVAG_014960	TVAG_198210	A2FG65	A2DDK8	TAF6_C domain-containing protein.	Myb-like DNA-binding domain containing protein.	0.771
TVAG_014960	TVAG_206920	A2FG65	A2EY70	TAF6_C domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.925
TVAG_014960	TVAG_225620	A2FG65	A2DNU1	TAF6_C domain-containing protein.	Uncharacterized protein.	0.925
TVAG_014960	TVAG_308330	A2FG65	A2EGN2	TAF6_C domain-containing protein.	Acetyltransferase, GNAT family protein.	0.772
TVAG_014960	TVAG_316930	A2FG65	A2F070	TAF6_C domain-containing protein.	TAF domain-containing protein.	0.758
TVAG_014960	TVAG_324780	A2FG65	A2G027	TAF6_C domain-containing protein.	Acetyltransferase, GNAT family protein.	0.772
TVAG_014960	TVAG_355640	A2FG65	A2FJT7	TAF6_C domain-containing protein.	SGF29 C-terminal domain-containing protein.	0.919
TVAG_014960	TVAG_440750	A2FG65	A2EX97	TAF6_C domain-containing protein.	WD repeat protein, putative.	0.801
TVAG_014960	TVAG_456490	A2FG65	A2DBX3	TAF6_C domain-containing protein.	Clan CA, family C19, ubiquitin hydrolase-like cysteine peptidase.	0.888
TVAG_014960	TVAG_486940	A2FG65	A2DZC2	TAF6_C domain-containing protein.	Myb-like DNA-binding domain containing protein.	0.798
TVAG_014960	TVAG_491320	A2FG65	A2E074	TAF6_C domain-containing protein.	TAF6_C domain-containing protein.	0.540
TVAG_014960	TVAG_497120	A2FG65	A2EGV5	TAF6_C domain-containing protein.	Acetyltransferase, GNAT family protein.	0.772