(28 nodes) Basal transcription factors, and Bromodomain associated network (Trichomonas vaginalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TVAG_071030	Uncharacterized protein. (314 aa)
	TVAG_035090	Bromodomain containing protein. (1230 aa)
	TVAG_198720	Uncharacterized protein. (245 aa)
	TVAG_167010	DNA repair helicase rad25 family protein. (740 aa)
	TVAG_178040	Uncharacterized protein. (123 aa)
	TVAG_045890	CMGC family protein kinase; Belongs to the protein kinase superfamily. (300 aa)
	TVAG_291560	Uncharacterized protein. (235 aa)
	TVAG_490860	DUF3591 domain-containing protein. (1016 aa)
	TVAG_028890	TAF6_C domain-containing protein. (398 aa)
	TVAG_044250	DNA repair helicase rad25 family protein. (744 aa)
	TVAG_464070	WD_REPEATS_REGION domain-containing protein. (526 aa)
	TVAG_212420	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (460 aa)
	TVAG_160840	Transcription initiation factor TFIID subunit A, putative. (126 aa)
	TVAG_062000	Uncharacterized protein. (286 aa)
	TVAG_364490	Uncharacterized protein. (980 aa)
	TVAG_487590	Uncharacterized protein. (391 aa)
	TVAG_311560	Uncharacterized protein. (311 aa)
	TVAG_100760	Transcription factor ssl1 family protein. (394 aa)
	TVAG_040830	TAFII55_N domain-containing protein. (391 aa)
	TVAG_030750	Uncharacterized protein. (284 aa)
	TVAG_111540	RNA polymerase Rpb7, N-terminal domain containing protein. (182 aa)
	TVAG_290240	Ssl1 domain-containing protein. (166 aa)
	TVAG_123480	TAF6_C domain-containing protein. (375 aa)
	TVAG_123210	WD_REPEATS_REGION domain-containing protein. (471 aa)
	TVAG_243280	TAF domain-containing protein. (438 aa)
	TVAG_389350	TFIIE alpha subunit family protein. (334 aa)
	TVAG_023310	Helicase ATP-binding domain-containing protein. (84 aa)
	TVAG_285070	Uncharacterized protein. (233 aa)

Your Current Organism:

Trichomonas vaginalis

NCBI taxonomy Id: 5722
Other names: T. vaginalis, Tritrichomonas vaginalis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TVAG_023310	TVAG_028890	A2G2G9	A2E0D6	Helicase ATP-binding domain-containing protein.	TAF6_C domain-containing protein.	0.836
TVAG_023310	TVAG_030750	A2G2G9	A2EYI3	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.973
TVAG_023310	TVAG_035090	A2G2G9	A2DAI3	Helicase ATP-binding domain-containing protein.	Bromodomain containing protein.	0.797
TVAG_023310	TVAG_040830	A2G2G9	A2EWP5	Helicase ATP-binding domain-containing protein.	TAFII55_N domain-containing protein.	0.850
TVAG_023310	TVAG_044250	A2G2G9	A2E0I3	Helicase ATP-binding domain-containing protein.	DNA repair helicase rad25 family protein.	0.949
TVAG_023310	TVAG_045890	A2G2G9	A2DMG0	Helicase ATP-binding domain-containing protein.	CMGC family protein kinase; Belongs to the protein kinase superfamily.	0.906
TVAG_023310	TVAG_062000	A2G2G9	A2E7W5	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.972
TVAG_023310	TVAG_071030	A2G2G9	A2D806	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.956
TVAG_023310	TVAG_100760	A2G2G9	A2ENQ3	Helicase ATP-binding domain-containing protein.	Transcription factor ssl1 family protein.	0.945
TVAG_023310	TVAG_111540	A2G2G9	A2F013	Helicase ATP-binding domain-containing protein.	RNA polymerase Rpb7, N-terminal domain containing protein.	0.918
TVAG_023310	TVAG_123210	A2G2G9	A2FH92	Helicase ATP-binding domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.796
TVAG_023310	TVAG_123480	A2G2G9	A2FCS4	Helicase ATP-binding domain-containing protein.	TAF6_C domain-containing protein.	0.836
TVAG_023310	TVAG_160840	A2G2G9	A2E4T9	Helicase ATP-binding domain-containing protein.	Transcription initiation factor TFIID subunit A, putative.	0.884
TVAG_023310	TVAG_167010	A2G2G9	A2DEA8	Helicase ATP-binding domain-containing protein.	DNA repair helicase rad25 family protein.	0.949
TVAG_023310	TVAG_178040	A2G2G9	A2DIF6	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.847
TVAG_023310	TVAG_198720	A2G2G9	A2DDQ7	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.931
TVAG_023310	TVAG_212420	A2G2G9	A2E2N2	Helicase ATP-binding domain-containing protein.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.972
TVAG_023310	TVAG_243280	A2G2G9	A2FI12	Helicase ATP-binding domain-containing protein.	TAF domain-containing protein.	0.836
TVAG_023310	TVAG_285070	A2G2G9	A2G4N7	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.907
TVAG_023310	TVAG_290240	A2G2G9	A2F7Q0	Helicase ATP-binding domain-containing protein.	Ssl1 domain-containing protein.	0.945