(22 nodes) Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay network (Trichomonas vaginalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TVAG_236960	Possible regulator of nonsense transcripts, putative. (619 aa)
	TVAG_237840	Regulator of nonsense transcripts 1, putative. (481 aa)
	TVAG_237860	UPF1-type domain-containing protein. (360 aa)
	TVAG_198330	Hydrolase, NUDIX family protein. (229 aa)
	TVAG_432490	DEAD/DEAH box helicase family protein. (1069 aa)
	TVAG_453890	Regulator of nonsense transcripts 1, putative. (882 aa)
	TVAG_026490	Hydrolase, NUDIX family protein. (270 aa)
	TVAG_206500	Hybrid-cluster protein, putative. (542 aa)
	TVAG_344290	Uncharacterized protein. (616 aa)
	TVAG_047080	Regulator of nonsense transcripts 1, putative. (803 aa)
	TVAG_374140	Hydrolase, NUDIX family protein. (357 aa)
	TVAG_363710	MIF4G domain containing protein. (950 aa)
	TVAG_349570	Uncharacterized protein. (995 aa)
	TVAG_443380	Uncharacterized protein. (442 aa)
	TVAG_443390	Regulator of nonsense transcripts 1, putative. (285 aa)
	TVAG_407160	Hydrolase, NUDIX family protein. (230 aa)
	TVAG_330710	Possible regulator of nonsense transcripts, putative. (814 aa)
	TVAG_126710	Uncharacterized protein. (766 aa)
	TVAG_270820	Hydrolase, NUDIX family protein. (261 aa)
	TVAG_336320	Hydroxylamine reductase, putative. (546 aa)
	TVAG_177450	DEAD/DEAH box helicase family protein. (1066 aa)
	TVAG_465640	Uncharacterized protein. (508 aa)

Your Current Organism:

Trichomonas vaginalis

NCBI taxonomy Id: 5722
Other names: T. vaginalis, Tritrichomonas vaginalis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TVAG_026490	TVAG_047080	A2DZ52	A2EAT3	Hydrolase, NUDIX family protein.	Regulator of nonsense transcripts 1, putative.	0.668
TVAG_026490	TVAG_126710	A2DZ52	A2FHT1	Hydrolase, NUDIX family protein.	Uncharacterized protein.	0.434
TVAG_026490	TVAG_236960	A2DZ52	A2DCP6	Hydrolase, NUDIX family protein.	Possible regulator of nonsense transcripts, putative.	0.668
TVAG_026490	TVAG_237840	A2DZ52	A2DCY4	Hydrolase, NUDIX family protein.	Regulator of nonsense transcripts 1, putative.	0.668
TVAG_026490	TVAG_237860	A2DZ52	A2DCY6	Hydrolase, NUDIX family protein.	UPF1-type domain-containing protein.	0.668
TVAG_026490	TVAG_330710	A2DZ52	A2F4N7	Hydrolase, NUDIX family protein.	Possible regulator of nonsense transcripts, putative.	0.668
TVAG_026490	TVAG_344290	A2DZ52	A2E7Q0	Hydrolase, NUDIX family protein.	Uncharacterized protein.	0.668
TVAG_026490	TVAG_349570	A2DZ52	A2EMN4	Hydrolase, NUDIX family protein.	Uncharacterized protein.	0.668
TVAG_026490	TVAG_363710	A2DZ52	A2EDU0	Hydrolase, NUDIX family protein.	MIF4G domain containing protein.	0.434
TVAG_026490	TVAG_443380	A2DZ52	A2F3Q0	Hydrolase, NUDIX family protein.	Uncharacterized protein.	0.668
TVAG_026490	TVAG_443390	A2DZ52	A2F3Q1	Hydrolase, NUDIX family protein.	Regulator of nonsense transcripts 1, putative.	0.668
TVAG_026490	TVAG_453890	A2DZ52	A2DPW5	Hydrolase, NUDIX family protein.	Regulator of nonsense transcripts 1, putative.	0.668
TVAG_026490	TVAG_465640	A2DZ52	A2GRE8	Hydrolase, NUDIX family protein.	Uncharacterized protein.	0.434
TVAG_047080	TVAG_026490	A2EAT3	A2DZ52	Regulator of nonsense transcripts 1, putative.	Hydrolase, NUDIX family protein.	0.668
TVAG_047080	TVAG_126710	A2EAT3	A2FHT1	Regulator of nonsense transcripts 1, putative.	Uncharacterized protein.	0.892
TVAG_047080	TVAG_198330	A2EAT3	A2DDL9	Regulator of nonsense transcripts 1, putative.	Hydrolase, NUDIX family protein.	0.668
TVAG_047080	TVAG_206500	A2EAT3	A2E1N5	Regulator of nonsense transcripts 1, putative.	Hybrid-cluster protein, putative.	0.896
TVAG_047080	TVAG_270820	A2EAT3	A2FIH4	Regulator of nonsense transcripts 1, putative.	Hydrolase, NUDIX family protein.	0.668
TVAG_047080	TVAG_336320	A2EAT3	A2FIM7	Regulator of nonsense transcripts 1, putative.	Hydroxylamine reductase, putative.	0.896
TVAG_047080	TVAG_363710	A2EAT3	A2EDU0	Regulator of nonsense transcripts 1, putative.	MIF4G domain containing protein.	0.892