(28 nodes) Neuron development network (Trichomonas vaginalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TVAG_153410	CKK domain-containing protein. (709 aa)
	TVAG_062080	Uncharacterized protein. (516 aa)
	TVAG_344060	Spatacsin_C domain-containing protein. (2043 aa)
	TVAG_185150	CMGC family protein kinase; Belongs to the protein kinase superfamily. (341 aa)
	TVAG_166340	Uncharacterized protein. (503 aa)
	TVAG_166580	Uncharacterized protein. (1088 aa)
	TVAG_149670	Uncharacterized protein. (580 aa)
	TVAG_336270	CMGC family protein kinase; Belongs to the protein kinase superfamily. (347 aa)
	TVAG_311190	Spatacsin_C domain-containing protein. (2037 aa)
	TVAG_471550	CKK domain-containing protein. (795 aa)
	TVAG_081890	CAMK family protein kinase; Belongs to the protein kinase superfamily. (344 aa)
	TVAG_483890	Uncharacterized protein. (1334 aa)
	TVAG_044960	TLD family protein. (484 aa)
	TVAG_299430	Uncharacterized protein. (157 aa)
	TVAG_451170	Homeobox domain containing protein. (166 aa)
	TVAG_324940	TPR Domain containing protein. (705 aa)
	TVAG_493070	Homeobox domain containing protein. (213 aa)
	TVAG_498910	CMGC family protein kinase; Belongs to the protein kinase superfamily. (347 aa)
	TVAG_166840	CMGC family protein kinase; Belongs to the protein kinase superfamily. (284 aa)
	TVAG_462540	CMGC family protein kinase; Belongs to the protein kinase superfamily. (267 aa)
	TVAG_083840	WD_REPEATS_REGION domain-containing protein. (1282 aa)
	TVAG_392700	TPR Domain containing protein. (723 aa)
	TVAG_019130	Uncharacterized protein. (213 aa)
	TVAG_028180	Uncharacterized protein. (503 aa)
	TVAG_003730	Uncharacterized protein. (1328 aa)
	TVAG_194360	Surface antigen BspA-like. (940 aa)
	TVAG_310210	Uncharacterized protein. (1312 aa)
	TVAG_404040	WD_REPEATS_REGION domain-containing protein. (1329 aa)

Your Current Organism:

Trichomonas vaginalis

NCBI taxonomy Id: 5722
Other names: T. vaginalis, Tritrichomonas vaginalis

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TVAG_003730	TVAG_083840	A2E587	A2DMA8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.540
TVAG_003730	TVAG_310210	A2E587	A2EKT7	Uncharacterized protein.	Uncharacterized protein.	0.587
TVAG_003730	TVAG_324940	A2E587	A2F129	Uncharacterized protein.	TPR Domain containing protein.	0.802
TVAG_003730	TVAG_392700	A2E587	A2DWX1	Uncharacterized protein.	TPR Domain containing protein.	0.801
TVAG_003730	TVAG_404040	A2E587	A2EGF3	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.562
TVAG_003730	TVAG_483890	A2E587	A2EA32	Uncharacterized protein.	Uncharacterized protein.	0.561
TVAG_028180	TVAG_166340	A2E557	A2DE41	Uncharacterized protein.	Uncharacterized protein.	0.540
TVAG_081890	TVAG_166840	A2E6Y1	A2DE91	CAMK family protein kinase; Belongs to the protein kinase superfamily.	CMGC family protein kinase; Belongs to the protein kinase superfamily.	0.583
TVAG_081890	TVAG_185150	A2E6Y1	A2D8G0	CAMK family protein kinase; Belongs to the protein kinase superfamily.	CMGC family protein kinase; Belongs to the protein kinase superfamily.	0.571
TVAG_081890	TVAG_336270	A2E6Y1	A2FIM3	CAMK family protein kinase; Belongs to the protein kinase superfamily.	CMGC family protein kinase; Belongs to the protein kinase superfamily.	0.582
TVAG_081890	TVAG_462540	A2E6Y1	A2DLW5	CAMK family protein kinase; Belongs to the protein kinase superfamily.	CMGC family protein kinase; Belongs to the protein kinase superfamily.	0.584
TVAG_081890	TVAG_498910	A2E6Y1	A2FCJ8	CAMK family protein kinase; Belongs to the protein kinase superfamily.	CMGC family protein kinase; Belongs to the protein kinase superfamily.	0.585
TVAG_083840	TVAG_003730	A2DMA8	A2E587	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.540
TVAG_083840	TVAG_310210	A2DMA8	A2EKT7	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.540
TVAG_083840	TVAG_324940	A2DMA8	A2F129	WD_REPEATS_REGION domain-containing protein.	TPR Domain containing protein.	0.707
TVAG_083840	TVAG_392700	A2DMA8	A2DWX1	WD_REPEATS_REGION domain-containing protein.	TPR Domain containing protein.	0.707
TVAG_083840	TVAG_404040	A2DMA8	A2EGF3	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.540
TVAG_083840	TVAG_483890	A2DMA8	A2EA32	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.540
TVAG_149670	TVAG_166580	A2FIK0	A2DE65	Uncharacterized protein.	Uncharacterized protein.	0.416
TVAG_166340	TVAG_028180	A2DE41	A2E557	Uncharacterized protein.	Uncharacterized protein.	0.540