(31 nodes) Meiotic cell cycle network (Trichomonas vaginalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TVAG_084700	Spindle pole body component. (619 aa)
	TVAG_055450	Checkpoint protein; Belongs to the HUS1 family. (272 aa)
	TVAG_325770	Type III restriction enzyme, res subunit family protein. (955 aa)
	TVAG_473090	BRCA2 repeat family protein. (1664 aa)
	TVAG_058400	Uncharacterized protein. (223 aa)
	TVAG_475060	Kelch motif family protein. (810 aa)
	TVAG_151700	Uncharacterized protein. (224 aa)
	TVAG_230730	HORMA domain containing protein. (327 aa)
	TVAG_056570	Cnd1 domain-containing protein. (1059 aa)
	TVAG_098295	Ser/Thr protein phosphatase, putative. (562 aa)
	TVAG_258350	Kelch motif family protein. (386 aa)
	TVAG_081520	Spindle pole body component. (635 aa)
	TVAG_206340	Uncharacterized protein. (544 aa)
	TVAG_206250	Spindle pole body component. (639 aa)
	TVAG_426440	Type III restriction enzyme, res subunit family protein. (871 aa)
	TVAG_348130	Spindle pole body component. (706 aa)
	TVAG_447530	ERCC4 domain containing protein. (723 aa)
	TVAG_122920	Cnd1 domain-containing protein. (1127 aa)
	TVAG_062830	Mnd1 family protein; Required for proper homologous chromosome pairing and efficient cross-over and intragenic recombination during meiosis. Belongs to the MND1 family. (205 aa)
	TVAG_214030	Mnd1 family protein; Required for proper homologous chromosome pairing and efficient cross-over and intragenic recombination during meiosis. Belongs to the MND1 family. (205 aa)
	TVAG_249880	Clan CD, family C50, separase-like cysteine peptidase. (932 aa)
	TVAG_077100	ATPase, AAA family protein; Belongs to the AAA ATPase family. (408 aa)
	TVAG_455180	MutS domain III family protein. (828 aa)
	TVAG_155030	Meiotic recombination protein DMC1/LIM15 homolog, putative; Belongs to the RecA family. (338 aa)
	TVAG_258950	Type IIB DNA topoisomerase family protein. (384 aa)
	TVAG_287330	Type III restriction enzyme, res subunit family protein. (790 aa)
	TVAG_472000	MutS domain III family protein. (768 aa)
	TVAG_332600	Zinc-hook domain-containing protein. (1292 aa)
	TVAG_332550	Uncharacterized protein. (185 aa)
	TVAG_332540	Zinc-hook domain-containing protein. (755 aa)
	TVAG_330740	Cnd1 domain-containing protein. (1131 aa)

Your Current Organism:

Trichomonas vaginalis

NCBI taxonomy Id: 5722
Other names: T. vaginalis, Tritrichomonas vaginalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TVAG_055450	TVAG_077100	A2EXY8	A2D9V7	Checkpoint protein; Belongs to the HUS1 family.	ATPase, AAA family protein; Belongs to the AAA ATPase family.	0.610
TVAG_055450	TVAG_098295	A2EXY8	A2ECB0	Checkpoint protein; Belongs to the HUS1 family.	Ser/Thr protein phosphatase, putative.	0.949
TVAG_055450	TVAG_155030	A2EXY8	A2FY08	Checkpoint protein; Belongs to the HUS1 family.	Meiotic recombination protein DMC1/LIM15 homolog, putative; Belongs to the RecA family.	0.798
TVAG_055450	TVAG_230730	A2EXY8	A2EE01	Checkpoint protein; Belongs to the HUS1 family.	HORMA domain containing protein.	0.815
TVAG_055450	TVAG_249880	A2EXY8	A2DCJ1	Checkpoint protein; Belongs to the HUS1 family.	Clan CD, family C50, separase-like cysteine peptidase.	0.885
TVAG_055450	TVAG_258950	A2EXY8	A2FYE0	Checkpoint protein; Belongs to the HUS1 family.	Type IIB DNA topoisomerase family protein.	0.764
TVAG_055450	TVAG_287330	A2EXY8	A2G193	Checkpoint protein; Belongs to the HUS1 family.	Type III restriction enzyme, res subunit family protein.	0.968
TVAG_055450	TVAG_325770	A2EXY8	A2EWH8	Checkpoint protein; Belongs to the HUS1 family.	Type III restriction enzyme, res subunit family protein.	0.968
TVAG_055450	TVAG_332540	A2EXY8	A2FAC7	Checkpoint protein; Belongs to the HUS1 family.	Zinc-hook domain-containing protein.	0.669
TVAG_055450	TVAG_332550	A2EXY8	A2FAC8	Checkpoint protein; Belongs to the HUS1 family.	Uncharacterized protein.	0.669
TVAG_055450	TVAG_332600	A2EXY8	A2FAD3	Checkpoint protein; Belongs to the HUS1 family.	Zinc-hook domain-containing protein.	0.669
TVAG_055450	TVAG_426440	A2EXY8	A2DYR1	Checkpoint protein; Belongs to the HUS1 family.	Type III restriction enzyme, res subunit family protein.	0.968
TVAG_055450	TVAG_447530	A2EXY8	A2DS24	Checkpoint protein; Belongs to the HUS1 family.	ERCC4 domain containing protein.	0.757
TVAG_055450	TVAG_455180	A2EXY8	A2FMY0	Checkpoint protein; Belongs to the HUS1 family.	MutS domain III family protein.	0.521
TVAG_055450	TVAG_472000	A2EXY8	A2G2N4	Checkpoint protein; Belongs to the HUS1 family.	MutS domain III family protein.	0.441
TVAG_055450	TVAG_473090	A2EXY8	A2ERV5	Checkpoint protein; Belongs to the HUS1 family.	BRCA2 repeat family protein.	0.798
TVAG_056570	TVAG_206340	A2ECL6	A2E1L9	Cnd1 domain-containing protein.	Uncharacterized protein.	0.980
TVAG_058400	TVAG_062830	A2EQA0	A2DLP5	Uncharacterized protein.	Mnd1 family protein; Required for proper homologous chromosome pairing and efficient cross-over and intragenic recombination during meiosis. Belongs to the MND1 family.	0.971
TVAG_058400	TVAG_077100	A2EQA0	A2D9V7	Uncharacterized protein.	ATPase, AAA family protein; Belongs to the AAA ATPase family.	0.445
TVAG_058400	TVAG_151700	A2EQA0	A2ELT5	Uncharacterized protein.	Uncharacterized protein.	0.546