(22 nodes) SAGA-type complex network (Trichomonas vaginalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TVAG_127940	Myb-like DNA-binding domain containing protein. (434 aa)
	TVAG_110020	TAF6_C domain-containing protein. (434 aa)
	TVAG_178040	Uncharacterized protein. (123 aa)
	TVAG_486940	Myb-like DNA-binding domain containing protein. (419 aa)
	TVAG_491320	TAF6_C domain-containing protein. (398 aa)
	TVAG_028890	TAF6_C domain-containing protein. (398 aa)
	TVAG_164270	SANT domain-containing protein. (401 aa)
	TVAG_444210	Uncharacterized protein. (403 aa)
	TVAG_160840	Transcription initiation factor TFIID subunit A, putative. (126 aa)
	TVAG_281960	TAF domain-containing protein. (438 aa)
	TVAG_149520	Uncharacterized protein. (127 aa)
	TVAG_016540	Uncharacterized protein. (286 aa)
	TVAG_316930	TAF domain-containing protein. (407 aa)
	TVAG_383990	Myb-like DNA-binding domain containing protein. (453 aa)
	TVAG_140100	Myb-like DNA-binding domain containing protein. (433 aa)
	TVAG_123480	TAF6_C domain-containing protein. (375 aa)
	TVAG_014960	TAF6_C domain-containing protein. (393 aa)
	TVAG_243280	TAF domain-containing protein. (438 aa)
	TVAG_107380	Myb-like DNA-binding domain containing protein. (437 aa)
	TVAG_004230	Myb-like DNA-binding domain containing protein. (442 aa)
	TVAG_121360	Uncharacterized protein. (119 aa)
	TVAG_229880	TAF domain-containing protein. (403 aa)

Your Current Organism:

Trichomonas vaginalis

NCBI taxonomy Id: 5722
Other names: T. vaginalis, Tritrichomonas vaginalis

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TVAG_004230	TVAG_014960	A2FU36	A2FG65	Myb-like DNA-binding domain containing protein.	TAF6_C domain-containing protein.	0.798
TVAG_004230	TVAG_028890	A2FU36	A2E0D6	Myb-like DNA-binding domain containing protein.	TAF6_C domain-containing protein.	0.798
TVAG_004230	TVAG_110020	A2FU36	A2DGK3	Myb-like DNA-binding domain containing protein.	TAF6_C domain-containing protein.	0.798
TVAG_004230	TVAG_121360	A2FU36	A2G0V6	Myb-like DNA-binding domain containing protein.	Uncharacterized protein.	0.902
TVAG_004230	TVAG_123480	A2FU36	A2FCS4	Myb-like DNA-binding domain containing protein.	TAF6_C domain-containing protein.	0.798
TVAG_004230	TVAG_149520	A2FU36	A2ELL9	Myb-like DNA-binding domain containing protein.	Uncharacterized protein.	0.926
TVAG_004230	TVAG_160840	A2FU36	A2E4T9	Myb-like DNA-binding domain containing protein.	Transcription initiation factor TFIID subunit A, putative.	0.906
TVAG_004230	TVAG_178040	A2FU36	A2DIF6	Myb-like DNA-binding domain containing protein.	Uncharacterized protein.	0.902
TVAG_004230	TVAG_229880	A2FU36	A2G108	Myb-like DNA-binding domain containing protein.	TAF domain-containing protein.	0.798
TVAG_004230	TVAG_243280	A2FU36	A2FI12	Myb-like DNA-binding domain containing protein.	TAF domain-containing protein.	0.798
TVAG_004230	TVAG_281960	A2FU36	A2E9R1	Myb-like DNA-binding domain containing protein.	TAF domain-containing protein.	0.798
TVAG_004230	TVAG_316930	A2FU36	A2F070	Myb-like DNA-binding domain containing protein.	TAF domain-containing protein.	0.798
TVAG_004230	TVAG_444210	A2FU36	A2E2G3	Myb-like DNA-binding domain containing protein.	Uncharacterized protein.	0.798
TVAG_004230	TVAG_491320	A2FU36	A2E074	Myb-like DNA-binding domain containing protein.	TAF6_C domain-containing protein.	0.798
TVAG_014960	TVAG_004230	A2FG65	A2FU36	TAF6_C domain-containing protein.	Myb-like DNA-binding domain containing protein.	0.798
TVAG_014960	TVAG_016540	A2FG65	A2EQZ2	TAF6_C domain-containing protein.	Uncharacterized protein.	0.798
TVAG_014960	TVAG_028890	A2FG65	A2E0D6	TAF6_C domain-containing protein.	TAF6_C domain-containing protein.	0.540
TVAG_014960	TVAG_107380	A2FG65	A2FSB7	TAF6_C domain-containing protein.	Myb-like DNA-binding domain containing protein.	0.798
TVAG_014960	TVAG_110020	A2FG65	A2DGK3	TAF6_C domain-containing protein.	TAF6_C domain-containing protein.	0.563
TVAG_014960	TVAG_121360	A2FG65	A2G0V6	TAF6_C domain-containing protein.	Uncharacterized protein.	0.952