(54 nodes) Lysine-acetylated histone binding network (Trichomonas vaginalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TVAG_474890	Bromodomain containing protein. (286 aa)
	TVAG_479780	Bromodomain containing protein. (229 aa)
	TVAG_029190	Bromodomain containing protein. (212 aa)
	TVAG_442150	Bromodomain containing protein. (232 aa)
	TVAG_051450	Uncharacterized protein. (1603 aa)
	TVAG_466080	Bromodomain containing protein. (290 aa)
	TVAG_040930	Bromodomain containing protein. (430 aa)
	TVAG_345290	WD_REPEATS_REGION domain-containing protein. (856 aa)
	TVAG_016970	WD_REPEATS_REGION domain-containing protein. (900 aa)
	TVAG_319080	Bromodomain containing protein. (204 aa)
	TVAG_056010	Bromodomain containing protein. (235 aa)
	TVAG_103320	Bromodomain containing protein. (188 aa)
	TVAG_312140	Bromodomain containing protein. (225 aa)
	TVAG_308310	Bromodomain containing protein. (263 aa)
	TVAG_051110	Bromodomain containing protein. (151 aa)
	TVAG_258140	Bromodomain containing protein. (138 aa)
	TVAG_399650	Bromodomain containing protein. (175 aa)
	TVAG_139350	Bromodomain containing protein. (233 aa)
	TVAG_212260	Bromodomain containing protein. (236 aa)
	TVAG_390140	Uncharacterized protein. (1638 aa)
	TVAG_348060	Bromodomain containing protein. (163 aa)
	TVAG_150600	Bromodomain containing protein. (142 aa)
	TVAG_150070	Bromodomain containing protein. (258 aa)
	TVAG_297080	Bromodomain containing protein. (234 aa)
	TVAG_303330	WD_REPEATS_REGION domain-containing protein. (1064 aa)
	TVAG_494080	Bromodomain containing protein. (139 aa)
	TVAG_083400	Bromodomain containing protein. (262 aa)
	TVAG_063140	WD_REPEATS_REGION domain-containing protein. (616 aa)
	TVAG_267890	Bromodomain containing protein. (228 aa)
	TVAG_246620	Bromodomain containing protein. (215 aa)
	TVAG_214050	Bromodomain containing protein. (231 aa)
	TVAG_110630	Uncharacterized protein. (2693 aa)
	TVAG_013550	Bromodomain containing protein. (287 aa)
	TVAG_093070	Bromodomain containing protein. (344 aa)
	TVAG_377950	Bromodomain containing protein. (322 aa)
	TVAG_390910	Bromodomain containing protein. (215 aa)
	TVAG_218760	Bromodomain containing protein. (225 aa)
	TVAG_287090	WD_REPEATS_REGION domain-containing protein. (902 aa)
	TVAG_364900	Bromodomain containing protein. (227 aa)
	TVAG_347270	Uncharacterized protein. (1421 aa)
	TVAG_334430	Bromodomain containing protein. (218 aa)
	TVAG_467210	Bromodomain containing protein. (234 aa)
	TVAG_103940	Bromodomain containing protein. (290 aa)
	TVAG_428820	Bromodomain containing protein. (148 aa)
	TVAG_105660	Bromodomain containing protein. (217 aa)
	TVAG_428570	WD_REPEATS_REGION domain-containing protein. (1184 aa)
	TVAG_304270	Bromodomain containing protein. (150 aa)
	TVAG_264210	Bromodomain containing protein. (152 aa)
	TVAG_390850	Bromodomain containing protein. (250 aa)
	TVAG_414460	Bromodomain containing protein. (230 aa)
	TVAG_469130	Bromodomain containing protein. (281 aa)
	TVAG_226890	Bromodomain containing protein. (226 aa)
	TVAG_316090	Bromodomain containing protein. (236 aa)
	TVAG_047820	Bromodomain containing protein. (142 aa)

Your Current Organism:

Trichomonas vaginalis

NCBI taxonomy Id: 5722
Other names: T. vaginalis, Tritrichomonas vaginalis

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TVAG_016970	TVAG_051450	A2ER35	A2EZ80	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.516
TVAG_016970	TVAG_110630	A2ER35	A2DGR4	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.453
TVAG_016970	TVAG_390140	A2ER35	A2E1B6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.516
TVAG_051450	TVAG_016970	A2EZ80	A2ER35	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.516
TVAG_051450	TVAG_063140	A2EZ80	A2DLS6	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.516
TVAG_051450	TVAG_246620	A2EZ80	A2DKK1	Uncharacterized protein.	Bromodomain containing protein.	0.516
TVAG_051450	TVAG_264210	A2EZ80	A2FFL8	Uncharacterized protein.	Bromodomain containing protein.	0.516
TVAG_051450	TVAG_287090	A2EZ80	A2FV79	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.516
TVAG_051450	TVAG_303330	A2EZ80	A2DR15	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.516
TVAG_051450	TVAG_345290	A2EZ80	A2EW07	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.516
TVAG_051450	TVAG_347270	A2EZ80	A2FSH3	Uncharacterized protein.	Uncharacterized protein.	0.516
TVAG_051450	TVAG_390140	A2EZ80	A2E1B6	Uncharacterized protein.	Uncharacterized protein.	0.900
TVAG_051450	TVAG_428570	A2EZ80	A2FJ47	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.516
TVAG_063140	TVAG_051450	A2DLS6	A2EZ80	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.516
TVAG_063140	TVAG_110630	A2DLS6	A2DGR4	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.453
TVAG_063140	TVAG_390140	A2DLS6	A2E1B6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.516
TVAG_105660	TVAG_150070	A2FLQ5	A2DRQ9	Bromodomain containing protein.	Bromodomain containing protein.	0.478
TVAG_110630	TVAG_016970	A2DGR4	A2ER35	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.453
TVAG_110630	TVAG_063140	A2DGR4	A2DLS6	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.453
TVAG_110630	TVAG_246620	A2DGR4	A2DKK1	Uncharacterized protein.	Bromodomain containing protein.	0.453