16 items (Trichomonas vaginalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TVAG_183120	FHA domain-containing protein. (365 aa)
	TVAG_238160	FHA domain containing protein. (316 aa)
	TVAG_391590	XYPPX repeat family protein. (496 aa)
	TVAG_447790	FHA domain-containing protein. (314 aa)
	TVAG_495500	Actin family protein; Belongs to the actin family. (394 aa)
	TVAG_212480	RuvB-like helicase; Belongs to the RuvB family. (505 aa)
	TVAG_109370	Bromodomain containing protein. (285 aa)
	TVAG_020290	FHA domain-containing protein. (316 aa)
	TVAG_029350	FHA domain-containing protein. (347 aa)
	TVAG_018040	FHA domain-containing protein. (328 aa)
	TVAG_304290	Uncharacterized protein. (309 aa)
	TVAG_428640	FHA domain-containing protein. (352 aa)
	TVAG_232800	RuvB-like helicase; Belongs to the RuvB family. (463 aa)
	TVAG_234150	FHA domain containing protein. (314 aa)
	TVAG_366930	FHA domain-containing protein. (336 aa)
	TVAG_452800	Uncharacterized protein. (495 aa)

Your Current Organism:

Trichomonas vaginalis

NCBI taxonomy Id: 5722
Other names: T. vaginalis, Tritrichomonas vaginalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TVAG_018040	TVAG_020290	A2FEU3	A2EQ18	FHA domain-containing protein.	FHA domain-containing protein.	0.540
TVAG_018040	TVAG_029350	A2FEU3	A2F527	FHA domain-containing protein.	FHA domain-containing protein.	0.540
TVAG_018040	TVAG_183120	A2FEU3	A2D950	FHA domain-containing protein.	FHA domain-containing protein.	0.540
TVAG_018040	TVAG_212480	A2FEU3	A2E2N8	FHA domain-containing protein.	RuvB-like helicase; Belongs to the RuvB family.	0.860
TVAG_018040	TVAG_232800	A2FEU3	A2FVZ4	FHA domain-containing protein.	RuvB-like helicase; Belongs to the RuvB family.	0.929
TVAG_018040	TVAG_234150	A2FEU3	A2FXP3	FHA domain-containing protein.	FHA domain containing protein.	0.540
TVAG_018040	TVAG_238160	A2FEU3	A2DD16	FHA domain-containing protein.	FHA domain containing protein.	0.540
TVAG_018040	TVAG_366930	A2FEU3	A2FZ79	FHA domain-containing protein.	FHA domain-containing protein.	0.574
TVAG_018040	TVAG_428640	A2FEU3	A2FJ54	FHA domain-containing protein.	FHA domain-containing protein.	0.588
TVAG_018040	TVAG_447790	A2FEU3	A2DS50	FHA domain-containing protein.	FHA domain-containing protein.	0.591
TVAG_018040	TVAG_495500	A2FEU3	A2DVJ3	FHA domain-containing protein.	Actin family protein; Belongs to the actin family.	0.852
TVAG_020290	TVAG_018040	A2EQ18	A2FEU3	FHA domain-containing protein.	FHA domain-containing protein.	0.540
TVAG_020290	TVAG_029350	A2EQ18	A2F527	FHA domain-containing protein.	FHA domain-containing protein.	0.540
TVAG_020290	TVAG_183120	A2EQ18	A2D950	FHA domain-containing protein.	FHA domain-containing protein.	0.540
TVAG_020290	TVAG_212480	A2EQ18	A2E2N8	FHA domain-containing protein.	RuvB-like helicase; Belongs to the RuvB family.	0.860
TVAG_020290	TVAG_232800	A2EQ18	A2FVZ4	FHA domain-containing protein.	RuvB-like helicase; Belongs to the RuvB family.	0.929
TVAG_020290	TVAG_234150	A2EQ18	A2FXP3	FHA domain-containing protein.	FHA domain containing protein.	0.540
TVAG_020290	TVAG_238160	A2EQ18	A2DD16	FHA domain-containing protein.	FHA domain containing protein.	0.540
TVAG_020290	TVAG_366930	A2EQ18	A2FZ79	FHA domain-containing protein.	FHA domain-containing protein.	0.540
TVAG_020290	TVAG_428640	A2EQ18	A2FJ54	FHA domain-containing protein.	FHA domain-containing protein.	0.540