(11 nodes) Non-motile cilium network (Trichomonas vaginalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TVAG_527370	Leucine Rich Repeat family protein. (255 aa)
	TVAG_392700	TPR Domain containing protein. (723 aa)
	TVAG_177980	Leucine Rich Repeat family protein. (198 aa)
	TVAG_337680	TPR Domain containing protein. (477 aa)
	TVAG_324940	TPR Domain containing protein. (705 aa)
	TVAG_208590	WD_REPEATS_REGION domain-containing protein. (1185 aa)
	TVAG_029300	Leucine Rich Repeat family protein. (225 aa)
	TVAG_032570	Leucine Rich Repeat family protein. (225 aa)
	TVAG_349970	Leucine Rich Repeat family protein. (261 aa)
	TVAG_030170	Leucine Rich Repeat family protein. (193 aa)
	TVAG_443630	WD_REPEATS_REGION domain-containing protein. (1118 aa)

Your Current Organism:

Trichomonas vaginalis

NCBI taxonomy Id: 5722
Other names: T. vaginalis, Tritrichomonas vaginalis

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TVAG_208590	TVAG_324940	A2F359	A2F129	WD_REPEATS_REGION domain-containing protein.	TPR Domain containing protein.	0.932
TVAG_208590	TVAG_337680	A2F359	A2EWL4	WD_REPEATS_REGION domain-containing protein.	TPR Domain containing protein.	0.801
TVAG_208590	TVAG_392700	A2F359	A2DWX1	WD_REPEATS_REGION domain-containing protein.	TPR Domain containing protein.	0.932
TVAG_208590	TVAG_443630	A2F359	A2ETY7	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.540
TVAG_324940	TVAG_208590	A2F129	A2F359	TPR Domain containing protein.	WD_REPEATS_REGION domain-containing protein.	0.932
TVAG_324940	TVAG_337680	A2F129	A2EWL4	TPR Domain containing protein.	TPR Domain containing protein.	0.463
TVAG_324940	TVAG_443630	A2F129	A2ETY7	TPR Domain containing protein.	WD_REPEATS_REGION domain-containing protein.	0.911
TVAG_337680	TVAG_208590	A2EWL4	A2F359	TPR Domain containing protein.	WD_REPEATS_REGION domain-containing protein.	0.801
TVAG_337680	TVAG_324940	A2EWL4	A2F129	TPR Domain containing protein.	TPR Domain containing protein.	0.463
TVAG_337680	TVAG_392700	A2EWL4	A2DWX1	TPR Domain containing protein.	TPR Domain containing protein.	0.463
TVAG_337680	TVAG_443630	A2EWL4	A2ETY7	TPR Domain containing protein.	WD_REPEATS_REGION domain-containing protein.	0.801
TVAG_392700	TVAG_208590	A2DWX1	A2F359	TPR Domain containing protein.	WD_REPEATS_REGION domain-containing protein.	0.932
TVAG_392700	TVAG_337680	A2DWX1	A2EWL4	TPR Domain containing protein.	TPR Domain containing protein.	0.463
TVAG_392700	TVAG_443630	A2DWX1	A2ETY7	TPR Domain containing protein.	WD_REPEATS_REGION domain-containing protein.	0.911
TVAG_443630	TVAG_208590	A2ETY7	A2F359	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.540
TVAG_443630	TVAG_324940	A2ETY7	A2F129	WD_REPEATS_REGION domain-containing protein.	TPR Domain containing protein.	0.911
TVAG_443630	TVAG_337680	A2ETY7	A2EWL4	WD_REPEATS_REGION domain-containing protein.	TPR Domain containing protein.	0.801
TVAG_443630	TVAG_392700	A2ETY7	A2DWX1	WD_REPEATS_REGION domain-containing protein.	TPR Domain containing protein.	0.911