20 items (Trichomonas vaginalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TVAG_335480	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (255 aa)
	TVAG_102980	Uncharacterized protein. (151 aa)
	TVAG_038050	Ribosomal protein L24, putative. (138 aa)
	TVAG_283020	Eukaryotic translation initiation factor 5A. (167 aa)
	TVAG_361780	Eukaryotic translation initiation factor 5A. (167 aa)
	TVAG_163900	60S ribosomal protein L6, putative. (151 aa)
	TVAG_190230	Ribosomal protein L24, putative. (138 aa)
	TVAG_026460	Ribosomal protein L14, putative. (128 aa)
	TVAG_459170	Uncharacterized protein. (151 aa)
	TVAG_005910	Ribosomal protein L8, putative. (251 aa)
	TVAG_303050	60S ribosomal protein L6, putative. (151 aa)
	TVAG_099510	60S ribosomal protein L6, putative. (151 aa)
	TVAG_262730	Ribosomal protein L14, putative. (128 aa)
	TVAG_353710	Ribosomal protein L14, putative. (128 aa)
	TVAG_329630	60S ribosomal protein L6, putative. (151 aa)
	TVAG_098430	40S ribosomal protein S4, putative. (74 aa)
	TVAG_098450	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (269 aa)
	TVAG_420180	KOW motif family protein. (900 aa)
	TVAG_119970	Uncharacterized protein. (151 aa)
	TVAG_131210	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (255 aa)

Your Current Organism:

Trichomonas vaginalis

NCBI taxonomy Id: 5722
Other names: T. vaginalis, Tritrichomonas vaginalis

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TVAG_005910	TVAG_026460	A2E6Z8	A2DZ49	Ribosomal protein L8, putative.	Ribosomal protein L14, putative.	0.999
TVAG_005910	TVAG_038050	A2E6Z8	A2DCS2	Ribosomal protein L8, putative.	Ribosomal protein L24, putative.	0.999
TVAG_005910	TVAG_098430	A2E6Z8	A2ECC4	Ribosomal protein L8, putative.	40S ribosomal protein S4, putative.	0.986
TVAG_005910	TVAG_098450	A2E6Z8	A2ECC6	Ribosomal protein L8, putative.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.986
TVAG_005910	TVAG_099510	A2E6Z8	A2FXW1	Ribosomal protein L8, putative.	60S ribosomal protein L6, putative.	0.994
TVAG_005910	TVAG_102980	A2E6Z8	A2GP87	Ribosomal protein L8, putative.	Uncharacterized protein.	0.974
TVAG_005910	TVAG_119970	A2E6Z8	A2D7E3	Ribosomal protein L8, putative.	Uncharacterized protein.	0.974
TVAG_005910	TVAG_131210	A2E6Z8	A2DBB7	Ribosomal protein L8, putative.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.986
TVAG_005910	TVAG_163900	A2E6Z8	A2DG67	Ribosomal protein L8, putative.	60S ribosomal protein L6, putative.	0.974
TVAG_005910	TVAG_190230	A2E6Z8	A2DKF2	Ribosomal protein L8, putative.	Ribosomal protein L24, putative.	0.999
TVAG_005910	TVAG_262730	A2E6Z8	A2FS39	Ribosomal protein L8, putative.	Ribosomal protein L14, putative.	0.996
TVAG_005910	TVAG_283020	A2E6Z8	A2DEK5	Ribosomal protein L8, putative.	Eukaryotic translation initiation factor 5A.	0.985
TVAG_005910	TVAG_303050	A2E6Z8	A2FZ05	Ribosomal protein L8, putative.	60S ribosomal protein L6, putative.	0.974
TVAG_005910	TVAG_329630	A2E6Z8	A2EBD1	Ribosomal protein L8, putative.	60S ribosomal protein L6, putative.	0.974
TVAG_005910	TVAG_335480	A2E6Z8	A2FC75	Ribosomal protein L8, putative.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.986
TVAG_005910	TVAG_353710	A2E6Z8	A2FDG4	Ribosomal protein L8, putative.	Ribosomal protein L14, putative.	0.996
TVAG_005910	TVAG_361780	A2E6Z8	A2GG34	Ribosomal protein L8, putative.	Eukaryotic translation initiation factor 5A.	0.985
TVAG_005910	TVAG_459170	A2E6Z8	A2E6C2	Ribosomal protein L8, putative.	Uncharacterized protein.	0.974
TVAG_026460	TVAG_005910	A2DZ49	A2E6Z8	Ribosomal protein L14, putative.	Ribosomal protein L8, putative.	0.999
TVAG_026460	TVAG_038050	A2DZ49	A2DCS2	Ribosomal protein L14, putative.	Ribosomal protein L24, putative.	0.982