(46 nodes) High mobility group box domain superfamily network (Trichomonas vaginalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TVAG_218180	HMG box family protein. (160 aa)
	TVAG_073420	HMG box family protein. (189 aa)
	TVAG_186110	HMG box family protein. (123 aa)
	TVAG_035570	HMG box family protein. (377 aa)
	TVAG_198180	HMG box family protein. (170 aa)
	TVAG_198410	HMG box family protein. (201 aa)
	TVAG_172880	HMG box family protein. (136 aa)
	TVAG_238580	Uncharacterized protein. (306 aa)
	TVAG_110110	HMG box family protein. (186 aa)
	TVAG_402230	HMG box family protein. (134 aa)
	TVAG_295200	HMG box family protein. (162 aa)
	TVAG_235340	Uncharacterized protein. (895 aa)
	TVAG_280760	HMG box family protein. (241 aa)
	TVAG_434400	Uncharacterized protein. (154 aa)
	TVAG_359540	Uncharacterized protein. (554 aa)
	TVAG_201900	HMG box family protein. (214 aa)
	TVAG_491040	HMG box family protein. (140 aa)
	TVAG_463800	HMG box family protein. (186 aa)
	TVAG_248230	HMG box family protein. (137 aa)
	TVAG_344020	HMG box family protein. (184 aa)
	TVAG_047050	HMG box family protein. (92 aa)
	TVAG_414220	HMG box family protein. (196 aa)
	TVAG_180150	HMG box family protein. (212 aa)
	TVAG_485890	HMG box family protein. (313 aa)
	TVAG_464420	HMG box family protein. (164 aa)
	TVAG_302620	HMG box family protein. (94 aa)
	TVAG_142450	HMG box family protein. (242 aa)
	TVAG_453060	HMG box family protein. (59 aa)
	TVAG_145330	HMG box family protein. (153 aa)
	TVAG_161660	HMG box family protein. (100 aa)
	TVAG_325010	HMG box family protein. (95 aa)
	TVAG_114290	Uncharacterized protein. (74 aa)
	TVAG_125540	HMG box family protein. (96 aa)
	TVAG_010230	HMG box family protein. (184 aa)
	TVAG_080190	HMG box family protein. (142 aa)
	TVAG_346400	HMG box family protein. (88 aa)
	TVAG_387180	HMG box domain-containing protein. (158 aa)
	TVAG_331910	Uncharacterized protein. (146 aa)
	TVAG_328220	HMG box family protein. (161 aa)
	TVAG_350980	HMG box family protein. (126 aa)
	TVAG_350890	Uncharacterized protein. (327 aa)
	TVAG_007580	HMG box family protein. (121 aa)
	TVAG_194720	HMG box family protein. (130 aa)
	TVAG_355670	HMG box family protein. (159 aa)
	TVAG_126740	HMG box family protein. (115 aa)
	TVAG_390840	HMG box domain-containing protein. (294 aa)

Your Current Organism:

Trichomonas vaginalis

NCBI taxonomy Id: 5722
Other names: T. vaginalis, Tritrichomonas vaginalis

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TVAG_010230	TVAG_142450	A2FA38	A2EHK4	HMG box family protein.	HMG box family protein.	0.737
TVAG_010230	TVAG_172880	A2FA38	A2DF38	HMG box family protein.	HMG box family protein.	0.711
TVAG_010230	TVAG_180150	A2FA38	A2EE44	HMG box family protein.	HMG box family protein.	0.735
TVAG_010230	TVAG_201900	A2FA38	A2DWL1	HMG box family protein.	HMG box family protein.	0.735
TVAG_010230	TVAG_280760	A2FA38	A2DRJ7	HMG box family protein.	HMG box family protein.	0.735
TVAG_010230	TVAG_414220	A2FA38	A2EC93	HMG box family protein.	HMG box family protein.	0.736
TVAG_142450	TVAG_010230	A2EHK4	A2FA38	HMG box family protein.	HMG box family protein.	0.737
TVAG_142450	TVAG_344020	A2EHK4	A2E7M3	HMG box family protein.	HMG box family protein.	0.741
TVAG_172880	TVAG_010230	A2DF38	A2FA38	HMG box family protein.	HMG box family protein.	0.711
TVAG_172880	TVAG_344020	A2DF38	A2E7M3	HMG box family protein.	HMG box family protein.	0.711
TVAG_180150	TVAG_010230	A2EE44	A2FA38	HMG box family protein.	HMG box family protein.	0.735
TVAG_180150	TVAG_344020	A2EE44	A2E7M3	HMG box family protein.	HMG box family protein.	0.740
TVAG_201900	TVAG_010230	A2DWL1	A2FA38	HMG box family protein.	HMG box family protein.	0.735
TVAG_201900	TVAG_344020	A2DWL1	A2E7M3	HMG box family protein.	HMG box family protein.	0.739
TVAG_280760	TVAG_010230	A2DRJ7	A2FA38	HMG box family protein.	HMG box family protein.	0.735
TVAG_280760	TVAG_344020	A2DRJ7	A2E7M3	HMG box family protein.	HMG box family protein.	0.735
TVAG_344020	TVAG_142450	A2E7M3	A2EHK4	HMG box family protein.	HMG box family protein.	0.741
TVAG_344020	TVAG_172880	A2E7M3	A2DF38	HMG box family protein.	HMG box family protein.	0.711
TVAG_344020	TVAG_180150	A2E7M3	A2EE44	HMG box family protein.	HMG box family protein.	0.740
TVAG_344020	TVAG_201900	A2E7M3	A2DWL1	HMG box family protein.	HMG box family protein.	0.739