(14 nodes) Importin beta family network (Trichomonas vaginalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TVAG_217030	Uncharacterized protein. (990 aa)
	TVAG_281510	Uncharacterized protein. (995 aa)
	TVAG_248990	Uncharacterized protein. (852 aa)
	TVAG_163310	Uncharacterized protein. (816 aa)
	TVAG_188290	Importin N-terminal domain-containing protein. (879 aa)
	TVAG_371810	Uncharacterized protein. (818 aa)
	TVAG_405250	Uncharacterized protein. (1048 aa)
	TVAG_027750	Importin N-terminal domain-containing protein. (980 aa)
	TVAG_258500	Uncharacterized protein. (1012 aa)
	TVAG_364430	Uncharacterized protein. (825 aa)
	TVAG_342770	Uncharacterized protein. (988 aa)
	TVAG_473050	Uncharacterized protein. (1102 aa)
	TVAG_244490	Uncharacterized protein. (868 aa)
	TVAG_250580	Uncharacterized protein. (1060 aa)

Your Current Organism:

Trichomonas vaginalis

NCBI taxonomy Id: 5722
Other names: T. vaginalis, Tritrichomonas vaginalis

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TVAG_163310	TVAG_250580	A2DG08	A2ESQ7	Uncharacterized protein.	Uncharacterized protein.	0.709
TVAG_163310	TVAG_281510	A2DG08	A2F975	Uncharacterized protein.	Uncharacterized protein.	0.709
TVAG_163310	TVAG_405250	A2DG08	A2E343	Uncharacterized protein.	Uncharacterized protein.	0.709
TVAG_188290	TVAG_250580	A2DV51	A2ESQ7	Importin N-terminal domain-containing protein.	Uncharacterized protein.	0.709
TVAG_188290	TVAG_281510	A2DV51	A2F975	Importin N-terminal domain-containing protein.	Uncharacterized protein.	0.709
TVAG_188290	TVAG_405250	A2DV51	A2E343	Importin N-terminal domain-containing protein.	Uncharacterized protein.	0.709
TVAG_244490	TVAG_250580	A2ES36	A2ESQ7	Uncharacterized protein.	Uncharacterized protein.	0.709
TVAG_244490	TVAG_281510	A2ES36	A2F975	Uncharacterized protein.	Uncharacterized protein.	0.709
TVAG_244490	TVAG_405250	A2ES36	A2E343	Uncharacterized protein.	Uncharacterized protein.	0.709
TVAG_248990	TVAG_250580	A2DCA3	A2ESQ7	Uncharacterized protein.	Uncharacterized protein.	0.709
TVAG_248990	TVAG_281510	A2DCA3	A2F975	Uncharacterized protein.	Uncharacterized protein.	0.709
TVAG_248990	TVAG_405250	A2DCA3	A2E343	Uncharacterized protein.	Uncharacterized protein.	0.709
TVAG_250580	TVAG_163310	A2ESQ7	A2DG08	Uncharacterized protein.	Uncharacterized protein.	0.709
TVAG_250580	TVAG_188290	A2ESQ7	A2DV51	Uncharacterized protein.	Importin N-terminal domain-containing protein.	0.709
TVAG_250580	TVAG_244490	A2ESQ7	A2ES36	Uncharacterized protein.	Uncharacterized protein.	0.709
TVAG_250580	TVAG_248990	A2ESQ7	A2DCA3	Uncharacterized protein.	Uncharacterized protein.	0.709
TVAG_250580	TVAG_364430	A2ESQ7	A2E9F4	Uncharacterized protein.	Uncharacterized protein.	0.709
TVAG_281510	TVAG_163310	A2F975	A2DG08	Uncharacterized protein.	Uncharacterized protein.	0.709
TVAG_281510	TVAG_188290	A2F975	A2DV51	Uncharacterized protein.	Importin N-terminal domain-containing protein.	0.709
TVAG_281510	TVAG_244490	A2F975	A2ES36	Uncharacterized protein.	Uncharacterized protein.	0.709