(4 nodes) Tetratricopeptide repeat protein 21A/21B network (Trichomonas vaginalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TVAG_491240	TPR Domain containing protein. (1273 aa)
	TVAG_371930	TPR Domain containing protein. (1270 aa)
	TVAG_020060	TPR Domain containing protein. (1255 aa)
	TVAG_006830	TPR Domain containing protein. (1288 aa)

Your Current Organism:

Trichomonas vaginalis

NCBI taxonomy Id: 5722
Other names: T. vaginalis, Tritrichomonas vaginalis

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TVAG_006830	TVAG_020060	A2FC06	A2EPZ5	TPR Domain containing protein.	TPR Domain containing protein.	0.540
TVAG_006830	TVAG_371930	A2FC06	A2E0W4	TPR Domain containing protein.	TPR Domain containing protein.	0.540
TVAG_006830	TVAG_491240	A2FC06	A2E067	TPR Domain containing protein.	TPR Domain containing protein.	0.550
TVAG_020060	TVAG_006830	A2EPZ5	A2FC06	TPR Domain containing protein.	TPR Domain containing protein.	0.540
TVAG_020060	TVAG_371930	A2EPZ5	A2E0W4	TPR Domain containing protein.	TPR Domain containing protein.	0.540
TVAG_020060	TVAG_491240	A2EPZ5	A2E067	TPR Domain containing protein.	TPR Domain containing protein.	0.540
TVAG_371930	TVAG_006830	A2E0W4	A2FC06	TPR Domain containing protein.	TPR Domain containing protein.	0.540
TVAG_371930	TVAG_020060	A2E0W4	A2EPZ5	TPR Domain containing protein.	TPR Domain containing protein.	0.540
TVAG_371930	TVAG_491240	A2E0W4	A2E067	TPR Domain containing protein.	TPR Domain containing protein.	0.540
TVAG_491240	TVAG_006830	A2E067	A2FC06	TPR Domain containing protein.	TPR Domain containing protein.	0.550
TVAG_491240	TVAG_020060	A2E067	A2EPZ5	TPR Domain containing protein.	TPR Domain containing protein.	0.540
TVAG_491240	TVAG_371930	A2E067	A2E0W4	TPR Domain containing protein.	TPR Domain containing protein.	0.540