32 items (Trichomonas vaginalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TVAG_321390	Histone H2B, testis, putative; Belongs to the histone H2B family. (66 aa)
	TVAG_290240	Ssl1 domain-containing protein. (166 aa)
	TVAG_062000	Uncharacterized protein. (286 aa)
	TVAG_118100	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
	TVAG_353520	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1104 aa)
	TVAG_100760	Transcription factor ssl1 family protein. (394 aa)
	TVAG_442190	Helicase ATP-binding domain-containing protein. (752 aa)
	TVAG_030750	Uncharacterized protein. (284 aa)
	TVAG_416970	Uncharacterized protein. (479 aa)
	TVAG_016650	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein. (341 aa)
	TVAG_396440	RNA polymerase Rpb1, domain 1 family protein. (387 aa)
	TVAG_352310	DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide, putative. (85 aa)
	TVAG_023310	Helicase ATP-binding domain-containing protein. (84 aa)
	TVAG_285070	Uncharacterized protein. (233 aa)
	TVAG_591230	RNA polymerase Rpb1, domain 2 family protein. (1004 aa)
	TVAG_023300	Helicase, putative. (546 aa)
	TVAG_221960	DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide, putative. (94 aa)
	TVAG_212420	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (460 aa)
	TVAG_044250	DNA repair helicase rad25 family protein. (744 aa)
	TVAG_380310	DNA-directed RNA polymerase I 190 kDa polypeptide-related protein. (257 aa)
	TVAG_380300	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (594 aa)
	TVAG_348020	DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide, putative. (94 aa)
	TVAG_434510	Uncharacterized protein. (73 aa)
	TVAG_291560	Uncharacterized protein. (235 aa)
	TVAG_113600	RNA polymerase Rpb5, N-terminal domain containing protein. (202 aa)
	TVAG_026390	Histone H2B; Belongs to the histone H2B family. (129 aa)
	TVAG_366300	Uncharacterized protein. (479 aa)
	TVAG_171980	RNA polymerase Rpb5, C-terminal domain containing protein. (217 aa)
	TVAG_167010	DNA repair helicase rad25 family protein. (740 aa)
	TVAG_186530	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (146 aa)
	TVAG_396430	DNA-directed RNA polymerase I 190 kDa polypeptide-related protein. (370 aa)
	TVAG_415700	S1 motif domain-containing protein. (174 aa)

Your Current Organism:

Trichomonas vaginalis

NCBI taxonomy Id: 5722
Other names: T. vaginalis, Tritrichomonas vaginalis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TVAG_016650	TVAG_023300	A2ER03	A2G2G8	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.	Helicase, putative.	0.881
TVAG_016650	TVAG_023310	A2ER03	A2G2G9	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.	Helicase ATP-binding domain-containing protein.	0.881
TVAG_016650	TVAG_026390	A2ER03	A2DJ26	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.	Histone H2B; Belongs to the histone H2B family.	0.908
TVAG_016650	TVAG_030750	A2ER03	A2EYI3	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.	Uncharacterized protein.	0.995
TVAG_016650	TVAG_044250	A2ER03	A2E0I3	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.	DNA repair helicase rad25 family protein.	0.920
TVAG_016650	TVAG_062000	A2ER03	A2E7W5	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.	Uncharacterized protein.	0.987
TVAG_016650	TVAG_100760	A2ER03	A2ENQ3	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.	Transcription factor ssl1 family protein.	0.925
TVAG_016650	TVAG_113600	A2ER03	A2DNL3	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.	RNA polymerase Rpb5, N-terminal domain containing protein.	0.998
TVAG_016650	TVAG_118100	A2ER03	A2EHZ7	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
TVAG_016650	TVAG_167010	A2ER03	A2DEA8	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.	DNA repair helicase rad25 family protein.	0.920
TVAG_016650	TVAG_171980	A2ER03	A2DEU9	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.	RNA polymerase Rpb5, C-terminal domain containing protein.	0.998
TVAG_016650	TVAG_186530	A2ER03	A2D8U6	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
TVAG_016650	TVAG_212420	A2ER03	A2E2N2	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.985
TVAG_016650	TVAG_221960	A2ER03	A2E3F1	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.	DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide, putative.	0.995
TVAG_016650	TVAG_285070	A2ER03	A2G4N7	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.	Uncharacterized protein.	0.955
TVAG_016650	TVAG_290240	A2ER03	A2F7Q0	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.	Ssl1 domain-containing protein.	0.925
TVAG_016650	TVAG_291560	A2ER03	A2DQT7	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.	Uncharacterized protein.	0.955
TVAG_016650	TVAG_321390	A2ER03	A2FK62	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.	Histone H2B, testis, putative; Belongs to the histone H2B family.	0.908
TVAG_016650	TVAG_348020	A2ER03	A2DSU3	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.	DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide, putative.	0.995
TVAG_016650	TVAG_352310	A2ER03	A2FZ94	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.	DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide, putative.	0.995