STRINGSTRING
aspA aspA DMR_00560 DMR_00560 DMR_02150 DMR_02150 DMR_02200 DMR_02200 DMR_02490 DMR_02490 DMR_05570 DMR_05570 ttdA ttdA ttdB ttdB dctA dctA frdC frdC frdA frdA frdB frdB DMR_05910 DMR_05910 glnA glnA acs acs DMR_07360 DMR_07360 DMR_07370 DMR_07370 vorB vorB vorC vorC glnN glnN lplA lplA gltA gltA fumC fumC gabD gabD DMR_17750 DMR_17750 acsA acsA gcvT gcvT DMR_18760 DMR_18760 korA korA korB korB korC korC sucC/sucD sucC/sucD nifJ nifJ gabT gabT iorA iorA iorB iorB DMR_26700 DMR_26700 glcB glcB DMR_27480 DMR_27480 DMR_28090 DMR_28090 DMR_28100 DMR_28100 icd icd prs prs DMR_30990 DMR_30990 gcvH gcvH gcvPA gcvPA gcvPB gcvPB DMR_31800 DMR_31800 DMR_31880 DMR_31880 cstA cstA dctA-2 dctA-2 frdC-2 frdC-2 frdA-2 frdA-2 frdB-2 frdB-2 ttdA-2 ttdA-2 ttdB-2 ttdB-2 gltD gltD DMR_34340 DMR_34340 DMR_34740 DMR_34740 merA merA gor gor DMR_35020 DMR_35020 DMR_39020 DMR_39020 glyA-2 glyA-2 DMR_42760 DMR_42760 DMR_42790 DMR_42790 glmS glmS putA putA DMR_45800 DMR_45800 DMR_45930 DMR_45930 DMR_46020 DMR_46020 DMR_46030 DMR_46030 DMR_46040 DMR_46040
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
aspAAspartate ammonia-lyase. (467 aa)
DMR_00560Asparagine synthetase. (636 aa)
DMR_02150Hypothetical protein. (400 aa)
DMR_02200Asp/Glu racemase family protein. (229 aa)
DMR_02490Putative aspartate ammonia-lyase. (503 aa)
DMR_05570Hypothetical membrane protein. (242 aa)
ttdAL-tartrate dehydratase alpha subunit. (279 aa)
ttdBL-tartrate dehydratase beta subunit. (184 aa)
dctAC4-dicarboxylic acid transport protein; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. (466 aa)
frdCFumarate reductase cytochrome b subunit. (219 aa)
frdAFumarate reductase flavoprotein subunit. (607 aa)
frdBFumarate reductase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (251 aa)
DMR_05910Putative asparaginase. (171 aa)
glnAGlutamine synthetase type I. (445 aa)
acsacetyl-CoA synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA. (634 aa)
DMR_07360Ketoisovalerate oxidoreductase subunit VorA; Fragment. (182 aa)
DMR_07370Ketoisovalerate oxidoreductase subunit VorA; Fragment. (250 aa)
vorBKetoisovalerate oxidoreductase subunit VorB. (353 aa)
vorCKetoisovalerate oxidoreductase subunit VorC. (79 aa)
glnNGlutamine synthetase type III. (726 aa)
lplALipoate-protein ligase. (323 aa)
gltACitrate synthase; Belongs to the citrate synthase family. (428 aa)
fumCFumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. (466 aa)
gabDSuccinate-semialdehyde dehydrogenase [NADP+]; Belongs to the aldehyde dehydrogenase family. (485 aa)
DMR_17750Hypothetical protein. (544 aa)
acsAAcetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. (661 aa)
gcvTAminomethyltransferase. (362 aa)
DMR_18760Ferredoxin. (108 aa)
korA2-oxoglutarate synthase subunit KorA. (380 aa)
korB2-oxoglutarate synthase subunit KorB. (278 aa)
korC2-oxoglutarate synthase subunit KorC. (246 aa)
sucC/sucDsuccinyl-CoA synthetase beta chain/succinyl-CoA synthetase alpha chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (705 aa)
nifJPyruvate-flavodoxin oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family. (1213 aa)
gabT4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (441 aa)
iorAIndolepyruvate oxidoreductase subunit IorA; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates. (613 aa)
iorBIndolepyruvate oxidoreductase subunit IorB. (200 aa)
DMR_26700Hypothetical protein. (577 aa)
glcBMalate synthase; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily. (724 aa)
DMR_27480Putative citrate synthase; Belongs to the citrate synthase family. (431 aa)
DMR_28090Putative pyruvate, water dikinase. (1195 aa)
DMR_28100Putative pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. (1223 aa)
icdIsocitrate dehydrogenase[NADP]. (383 aa)
prsRibose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. (314 aa)
DMR_30990Pyridine nucleotide-disulphide oxidoreductase family protein. (367 aa)
gcvHGlycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. (124 aa)
gcvPAGlycine dehydrogenase [decarboxylating] subunit 1; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. (443 aa)
gcvPBGlycine dehydrogenase [decarboxylating] subunit 2. (504 aa)
DMR_31800Putative dihydrolipoamide dehydrogenase; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. (455 aa)
DMR_31880Putative signaling protein. (372 aa)
cstACarbon starvation protein A. (603 aa)
dctA-2C4-dicarboxylate transport protein; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. (453 aa)
frdC-2Fumarate reductase cytochrome b subunit. (219 aa)
frdA-2Fumarate reductase flavoprotein subunit. (607 aa)
frdB-2Fumarate reductase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (251 aa)
ttdA-2L-tartrate dehydratase alpha subunit. (279 aa)
ttdB-2L-tartrate dehydratase beta subunit. (180 aa)
gltDGlutamate synthase small subunit. (492 aa)
DMR_34340NADP-dependent malic enzyme. (439 aa)
DMR_34740Aminotransferase. (393 aa)
merAPutative mercuric reductase. (480 aa)
gorGlutathione reductase. (444 aa)
DMR_35020Pyruvate phosphate dikinase, PEP/pyruvate binding domain protein. (872 aa)
DMR_39020Putative aconitate hydratase. (656 aa)
glyA-2Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (412 aa)
DMR_42760Asparagine synthetase. (634 aa)
DMR_42790Asparagine synthetase. (624 aa)
glmSGlucosamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source. (607 aa)
putAProline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family. (1005 aa)
DMR_45800Hypothetical protein. (256 aa)
DMR_45930Aspartate aminotransferase. (392 aa)
DMR_46020Hypothetical protein. (376 aa)
DMR_46030Glutamate synthase large subunit; Belongs to the glutamate synthase family. (544 aa)
DMR_46040Nucleotide-disulphide oxidoreductase family protein. (777 aa)
Your Current Organism:
Desulfovibrio magneticus RS1
NCBI taxonomy Id: 573370
Other names: D. magneticus RS-1, Desulfovibrio magneticus 700980, Desulfovibrio magneticus RS-1, Desulfovibrio magneticus str. RS-1, Desulfovibrio magneticus strain RS-1
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