(12 nodes) Actin filament bundle assembly network (Thermothelomyces thermophilus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MYCTH_2303748	Uncharacterized protein. (649 aa)
	MYCTH_2071736	Uncharacterized protein. (604 aa)
	MYCTH_2312860	AIP3 domain-containing protein. (1034 aa)
	MYCTH_2310222	SH3 domain-containing protein. (644 aa)
	MYCTH_103620	Uncharacterized protein. (403 aa)
	MYCTH_2306401	SH3 domain-containing protein. (393 aa)
	MYCTH_2307475	Uncharacterized protein. (652 aa)
	MYCTH_2304115	CRIB domain-containing protein. (852 aa)
	MYCTH_2300045	Uncharacterized protein. (305 aa)
	MYCTH_2301261	Uncharacterized protein. (1846 aa)
	MYCTH_2125988	Uncharacterized protein. (603 aa)
	MYCTH_2297171	Uncharacterized protein. (382 aa)

Your Current Organism:

Thermothelomyces thermophilus

NCBI taxonomy Id: 573729
Other names: Myceliophthora thermophila ATCC 42464, Sporotrichum thermophile ATCC 42464, T. thermophilus ATCC 42464, Thermothelomyces thermophilus ATCC 42464, Thielavia heterothallica ATCC 42464

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MYCTH_2125988	MYCTH_2312860	G2Q844	G2QNC1	Uncharacterized protein.	AIP3 domain-containing protein.	0.583
MYCTH_2297171	MYCTH_2312860	G2Q4N2	G2QNC1	Uncharacterized protein.	AIP3 domain-containing protein.	0.583
MYCTH_2301261	MYCTH_2307475	G2Q9D1	G2QFX7	Uncharacterized protein.	Uncharacterized protein.	0.518
MYCTH_2301261	MYCTH_2312860	G2Q9D1	G2QNC1	Uncharacterized protein.	AIP3 domain-containing protein.	0.830
MYCTH_2307475	MYCTH_2301261	G2QFX7	G2Q9D1	Uncharacterized protein.	Uncharacterized protein.	0.518
MYCTH_2312860	MYCTH_2125988	G2QNC1	G2Q844	AIP3 domain-containing protein.	Uncharacterized protein.	0.583
MYCTH_2312860	MYCTH_2297171	G2QNC1	G2Q4N2	AIP3 domain-containing protein.	Uncharacterized protein.	0.583
MYCTH_2312860	MYCTH_2301261	G2QNC1	G2Q9D1	AIP3 domain-containing protein.	Uncharacterized protein.	0.830

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