STRINGSTRING
SDY11980.1 SDY11980.1 rnt rnt SDY04956.1 SDY04956.1 SDY06759.1 SDY06759.1 dnaX dnaX SDX79963.1 SDX79963.1 SDX65994.1 SDX65994.1 SDX43602.1 SDX43602.1 SDX39306.1 SDX39306.1 SDY16007.1 SDY16007.1 SDW73021.1 SDW73021.1 SDW52053.1 SDW52053.1 rep rep SDW89520.1 SDW89520.1 SDW91228.1 SDW91228.1 SDW94861.1 SDW94861.1 xseB xseB SDW84996.1 SDW84996.1 SDX16896.1 SDX16896.1 lexA lexA SDW07817.1 SDW07817.1 SDW07971.1 SDW07971.1 mutL mutL SDW28190.1 SDW28190.1 SDW53324.1 SDW53324.1 SDW55141.1 SDW55141.1 SDW57456.1 SDW57456.1 xseA xseA ligA ligA SDW64930.1 SDW64930.1 mutS mutS SDW71184.1 SDW71184.1 SDW72108.1 SDW72108.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SDY11980.1DNA polymerase-3 subunit epsilon. (688 aa)
rntRNAse T; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis. (221 aa)
SDY04956.1Superfamily I DNA or RNA helicase. (558 aa)
SDY06759.1Hypothetical protein. (80 aa)
dnaXDNA polymerase-3 subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (621 aa)
SDX79963.1DNA polymerase V; Belongs to the peptidase S24 family. (144 aa)
SDX65994.1DNA polymerase III, delta subunit. (352 aa)
SDX43602.1Superoxide dismutase, Fe-Mn family; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (215 aa)
SDX39306.1Peptidyl-prolyl cis-trans isomerase D. (602 aa)
SDY16007.1Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. (181 aa)
SDW73021.1Hypothetical protein. (168 aa)
SDW52053.1Superoxide dismutase, Fe-Mn family; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (203 aa)
repATP-dependent DNA helicase Rep; Rep helicase is a single-stranded DNA-dependent ATPase involved in DNA replication; it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction. (696 aa)
SDW89520.1Part of AAA domain-containing protein. (578 aa)
SDW91228.1ATP-dependent DNA helicase UvrD. (735 aa)
SDW94861.1DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (367 aa)
xseBExodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (93 aa)
SDW84996.1Peptidyl-prolyl cis-trans isomerase C. (273 aa)
SDX16896.1DNA polymerase III, chi subunit. (145 aa)
lexASOS-response transcriptional repressor, LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. (222 aa)
SDW07817.1DNA helicase-2 / ATP-dependent DNA helicase PcrA. (729 aa)
SDW07971.1DNA polymerase III, delta prime subunit. (333 aa)
mutLDNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (642 aa)
SDW28190.1DNA helicase-2 / ATP-dependent DNA helicase PcrA. (694 aa)
SDW53324.1DNA polymerase-3 subunit epsilon. (244 aa)
SDW55141.1Peptidyl-prolyl cis-trans isomerase SurA. (324 aa)
SDW57456.1DNA polymerase-3 subunit epsilon. (205 aa)
xseAExodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (446 aa)
ligADNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. (678 aa)
SDW64930.1Repressor LexA; Represses a number of genes involved in the response to DNA damage (SOS response). (156 aa)
mutSDNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. (860 aa)
SDW71184.1single-stranded-DNA-specific exonuclease. (590 aa)
SDW72108.1Exodeoxyribonuclease I subunit C. (487 aa)
Your Current Organism:
Aidingimonas halophila
NCBI taxonomy Id: 574349
Other names: A. halophila, Aidingimonas halophila Wang et al. 2009, CCTCC AB 207002, Chromohalobacter sp. BH017, DSM 19219, KCTC 12885, Modicisalibacter sp. YIM 90637, YIM 90637
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