34 items (Coccomyxa subellipsoidea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I0YXV9_COCSC	WD40 repeat-like protein. (388 aa)
	I0YRS0_COCSC	Nop-domain-containing protein. (558 aa)
	I0YY54_COCSC	CBF-domain-containing protein. (960 aa)
	I0YYB1_COCSC	Uncharacterized protein. (1757 aa)
	I0YZ82_COCSC	Small nucleolar ribonucleo protein U3 component. (182 aa)
	I0YZQ7_COCSC	ARM repeat-containing protein. (2946 aa)
	I0Z366_COCSC	WD40 repeat-like protein. (450 aa)
	I0Z3F1_COCSC	WD40 repeat-like protein. (461 aa)
	I0Z3Q1_COCSC	Small-subunit processome. (177 aa)
	I0YQ72_COCSC	Mpp10-domain-containing protein. (136 aa)
	I0Z442_COCSC	WD40 repeat-like protein. (686 aa)
	I0Z496_COCSC	Nop-domain-containing protein. (554 aa)
	I0Z4E8_COCSC	WD40 repeat-like protein. (820 aa)
	I0Z723_COCSC	Fibrillarin. (244 aa)
	I0Z784_COCSC	BP28CT domain-containing protein. (2078 aa)
	I0Z7P7_COCSC	Uncharacterized protein. (1462 aa)
	I0Z864_COCSC	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (392 aa)
	I0Z8E0_COCSC	Brix-domain-containing protein. (297 aa)
	I0Z9Q1_COCSC	Uncharacterized protein. (594 aa)
	I0ZA49_COCSC	WD40 repeat-like protein. (352 aa)
	I0ZA68_COCSC	Nop14-like protein. (983 aa)
	I0YPS9_COCSC	DUF1253-domain-containing protein. (470 aa)
	I0YMQ5_COCSC	Uncharacterized protein. (411 aa)
	I0YM64_COCSC	WD40 repeat-like protein. (890 aa)
	I0YL24_COCSC	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (195 aa)
	I0YK05_COCSC	Fcf1-domain-containing protein. (192 aa)
	I0YJE4_COCSC	Uncharacterized protein. (102 aa)
	I0Z6X2_COCSC	WD40 repeat-like protein. (550 aa)
	I0YRV4_COCSC	Transducin family protein. (904 aa)
	I0YTI2_COCSC	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	I0YU81_COCSC	WD40 repeat-like protein. (904 aa)
	I0YUK6_COCSC	Pre-rRNA processing protein. (229 aa)
	I0YWF3_COCSC	Sas10 domain-containing protein. (711 aa)
	I0YWI3_COCSC	WD40 repeat-like protein. (421 aa)

Your Current Organism:

Coccomyxa subellipsoidea

NCBI taxonomy Id: 574566
Other names: C. subellipsoidea C-169, Chlorella vulgaris C-169, Coccomyxa sp. C-169, Coccomyxa subellipsoidea C-169

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I0YJE4_COCSC	I0YK05_COCSC	I0YJE4	I0YK05	Uncharacterized protein.	Fcf1-domain-containing protein.	0.671
I0YJE4_COCSC	I0YM64_COCSC	I0YJE4	I0YM64	Uncharacterized protein.	WD40 repeat-like protein.	0.479
I0YJE4_COCSC	I0YMQ5_COCSC	I0YJE4	I0YMQ5	Uncharacterized protein.	Uncharacterized protein.	0.819
I0YJE4_COCSC	I0YPS9_COCSC	I0YJE4	I0YPS9	Uncharacterized protein.	DUF1253-domain-containing protein.	0.769
I0YJE4_COCSC	I0YQ72_COCSC	I0YJE4	I0YQ72	Uncharacterized protein.	Mpp10-domain-containing protein.	0.484
I0YJE4_COCSC	I0YRV4_COCSC	I0YJE4	I0YRV4	Uncharacterized protein.	Transducin family protein.	0.502
I0YJE4_COCSC	I0YTI2_COCSC	I0YJE4	I0YTI2	Uncharacterized protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.590
I0YJE4_COCSC	I0YUK6_COCSC	I0YJE4	I0YUK6	Uncharacterized protein.	Pre-rRNA processing protein.	0.830
I0YJE4_COCSC	I0YWF3_COCSC	I0YJE4	I0YWF3	Uncharacterized protein.	Sas10 domain-containing protein.	0.872
I0YJE4_COCSC	I0YY54_COCSC	I0YJE4	I0YY54	Uncharacterized protein.	CBF-domain-containing protein.	0.673
I0YJE4_COCSC	I0YYB1_COCSC	I0YJE4	I0YYB1	Uncharacterized protein.	Uncharacterized protein.	0.723
I0YJE4_COCSC	I0YZ82_COCSC	I0YJE4	I0YZ82	Uncharacterized protein.	Small nucleolar ribonucleo protein U3 component.	0.820
I0YJE4_COCSC	I0YZQ7_COCSC	I0YJE4	I0YZQ7	Uncharacterized protein.	ARM repeat-containing protein.	0.561
I0YJE4_COCSC	I0Z3Q1_COCSC	I0YJE4	I0Z3Q1	Uncharacterized protein.	Small-subunit processome.	0.907
I0YJE4_COCSC	I0Z442_COCSC	I0YJE4	I0Z442	Uncharacterized protein.	WD40 repeat-like protein.	0.683
I0YJE4_COCSC	I0Z496_COCSC	I0YJE4	I0Z496	Uncharacterized protein.	Nop-domain-containing protein.	0.575
I0YJE4_COCSC	I0Z6X2_COCSC	I0YJE4	I0Z6X2	Uncharacterized protein.	WD40 repeat-like protein.	0.847
I0YJE4_COCSC	I0Z7P7_COCSC	I0YJE4	I0Z7P7	Uncharacterized protein.	Uncharacterized protein.	0.819
I0YJE4_COCSC	I0Z864_COCSC	I0YJE4	I0Z864	Uncharacterized protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.994
I0YJE4_COCSC	I0Z8E0_COCSC	I0YJE4	I0Z8E0	Uncharacterized protein.	Brix-domain-containing protein.	0.775