(37 nodes) Small ribosomal subunit network (Coccomyxa subellipsoidea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I0YR45_COCSC	Putative 40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (217 aa)
	I0Z8M3_COCSC	Ribosomal protein S23 component of cytosolic 80S ribosome and 40S small subunit; Belongs to the universal ribosomal protein uS12 family. (142 aa)
	I0Z8N6_COCSC	40S ribosomal protein S27. (86 aa)
	I0Z8N7_COCSC	40S ribosomal protein S27. (86 aa)
	I0Z8T1_COCSC	Ribosomal protein S2 component of cytosolic 80S ribosome and 40S small subunit; Belongs to the universal ribosomal protein uS5 family. (266 aa)
	I0Z900_COCSC	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (126 aa)
	I0YIW9_COCSC	Plastid ribosomal protein S5A small ribosomal subunit; Belongs to the universal ribosomal protein uS5 family. (185 aa)
	I0YJ93_COCSC	S10_plectin domain-containing protein. (172 aa)
	I0YJU2_COCSC	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (103 aa)
	I0YL24_COCSC	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (195 aa)
	I0YM13_COCSC	Uncharacterized protein. (126 aa)
	I0YM48_COCSC	Ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family. (225 aa)
	I0YNQ2_COCSC	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (98 aa)
	I0YP98_COCSC	Uncharacterized protein. (113 aa)
	I0YQ00_COCSC	Ribosomal protein S15a component of cytosolic 80S ribosome and 40S small subunit; Belongs to the universal ribosomal protein uS8 family. (130 aa)
	I0YQ55_COCSC	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (318 aa)
	I0YQQ4_COCSC	Ribosomal protein S28e. (65 aa)
	I0YQT7_COCSC	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (295 aa)
	I0YR16_COCSC	Ribosomal protein S19 component of cytosolic 80S ribosome and 40S small subunit. (158 aa)
	I0Z7I7_COCSC	30S ribosomal protein S17, chloroplastic. (75 aa)
	I0Z6X0_COCSC	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	I0Z605_COCSC	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (259 aa)
	I0Z4M5_COCSC	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (60 aa)
	I0Z418_COCSC	Ribosomal protein S17 component of cytosolic 80S ribosome and 40S small subunit. (155 aa)
	I0Z204_COCSC	Ribosomal protein S1. (120 aa)
	I0Z1W7_COCSC	Ribosomal protein S18 component of cytosolic 80S ribosome and 40S small subunit; Belongs to the universal ribosomal protein uS13 family. (153 aa)
	I0Z0H7_COCSC	Ubiquitin-like domain-containing protein. (151 aa)
	I0YZW9_COCSC	Ribosomal protein S9 component of cytosolic 80S ribosome and 40S small subunit; Belongs to the universal ribosomal protein uS4 family. (180 aa)
	I0YXG7_COCSC	Uncharacterized protein. (380 aa)
	I0YX21_COCSC	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (252 aa)
	I0YX16_COCSC	MRP-S28 domain-containing protein. (273 aa)
	I0YWV5_COCSC	Uncharacterized protein. (199 aa)
	I0YWF4_COCSC	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (127 aa)
	I0YU44_COCSC	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (132 aa)
	I0YT89_COCSC	40S ribosomal protein S29. (56 aa)
	I0YSG4_COCSC	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (82 aa)
	I0YS97_COCSC	Mitochondrial ribosomal protein S6. (97 aa)

Your Current Organism:

Coccomyxa subellipsoidea

NCBI taxonomy Id: 574566
Other names: C. subellipsoidea C-169, Chlorella vulgaris C-169, Coccomyxa sp. C-169, Coccomyxa subellipsoidea C-169

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I0YIW9_COCSC	I0YJ93_COCSC	I0YIW9	I0YJ93	Plastid ribosomal protein S5A small ribosomal subunit; Belongs to the universal ribosomal protein uS5 family.	S10_plectin domain-containing protein.	0.977
I0YIW9_COCSC	I0YJU2_COCSC	I0YIW9	I0YJU2	Plastid ribosomal protein S5A small ribosomal subunit; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.915
I0YIW9_COCSC	I0YL24_COCSC	I0YIW9	I0YL24	Plastid ribosomal protein S5A small ribosomal subunit; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.974
I0YIW9_COCSC	I0YM13_COCSC	I0YIW9	I0YM13	Plastid ribosomal protein S5A small ribosomal subunit; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.631
I0YIW9_COCSC	I0YM48_COCSC	I0YIW9	I0YM48	Plastid ribosomal protein S5A small ribosomal subunit; Belongs to the universal ribosomal protein uS5 family.	Ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family.	0.978
I0YIW9_COCSC	I0YNQ2_COCSC	I0YIW9	I0YNQ2	Plastid ribosomal protein S5A small ribosomal subunit; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.974
I0YIW9_COCSC	I0YQ00_COCSC	I0YIW9	I0YQ00	Plastid ribosomal protein S5A small ribosomal subunit; Belongs to the universal ribosomal protein uS5 family.	Ribosomal protein S15a component of cytosolic 80S ribosome and 40S small subunit; Belongs to the universal ribosomal protein uS8 family.	0.899
I0YIW9_COCSC	I0YQ55_COCSC	I0YIW9	I0YQ55	Plastid ribosomal protein S5A small ribosomal subunit; Belongs to the universal ribosomal protein uS5 family.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.916
I0YIW9_COCSC	I0YQQ4_COCSC	I0YIW9	I0YQQ4	Plastid ribosomal protein S5A small ribosomal subunit; Belongs to the universal ribosomal protein uS5 family.	Ribosomal protein S28e.	0.969
I0YIW9_COCSC	I0YQT7_COCSC	I0YIW9	I0YQT7	Plastid ribosomal protein S5A small ribosomal subunit; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.978
I0YIW9_COCSC	I0YR16_COCSC	I0YIW9	I0YR16	Plastid ribosomal protein S5A small ribosomal subunit; Belongs to the universal ribosomal protein uS5 family.	Ribosomal protein S19 component of cytosolic 80S ribosome and 40S small subunit.	0.977
I0YIW9_COCSC	I0YR45_COCSC	I0YIW9	I0YR45	Plastid ribosomal protein S5A small ribosomal subunit; Belongs to the universal ribosomal protein uS5 family.	Putative 40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.979
I0YIW9_COCSC	I0YS97_COCSC	I0YIW9	I0YS97	Plastid ribosomal protein S5A small ribosomal subunit; Belongs to the universal ribosomal protein uS5 family.	Mitochondrial ribosomal protein S6.	0.959
I0YIW9_COCSC	I0YSG4_COCSC	I0YIW9	I0YSG4	Plastid ribosomal protein S5A small ribosomal subunit; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.	0.973
I0YIW9_COCSC	I0YT89_COCSC	I0YIW9	I0YT89	Plastid ribosomal protein S5A small ribosomal subunit; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S29.	0.972
I0YIW9_COCSC	I0YU44_COCSC	I0YIW9	I0YU44	Plastid ribosomal protein S5A small ribosomal subunit; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	0.977
I0YIW9_COCSC	I0YWF4_COCSC	I0YIW9	I0YWF4	Plastid ribosomal protein S5A small ribosomal subunit; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.971
I0YIW9_COCSC	I0YWV5_COCSC	I0YIW9	I0YWV5	Plastid ribosomal protein S5A small ribosomal subunit; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.895
I0YIW9_COCSC	I0YX16_COCSC	I0YIW9	I0YX16	Plastid ribosomal protein S5A small ribosomal subunit; Belongs to the universal ribosomal protein uS5 family.	MRP-S28 domain-containing protein.	0.891
I0YIW9_COCSC	I0YX21_COCSC	I0YIW9	I0YX21	Plastid ribosomal protein S5A small ribosomal subunit; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.977