(13 nodes) Ribosomal protein L2, domain 2 network (Coccomyxa subellipsoidea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I0YSN7_COCSC	Ribosomal protein L24. (144 aa)
	I0ZAJ5_COCSC	Kin17_mid domain-containing protein. (390 aa)
	I0Z6P7_COCSC	Organellar elongation factor P. (200 aa)
	I0Z5V1_COCSC	Ribosomal protein L14 component of cytosolic 80S ribosome and 60S large subunit. (133 aa)
	I0Z4H8_COCSC	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (260 aa)
	I0YZL0_COCSC	Ribosomal protein L24; Belongs to the universal ribosomal protein uL24 family. (128 aa)
	I0YXY6_COCSC	Ribosomal protein L6 component of cytosolic 80S ribosome and 60S large subunit. (231 aa)
	I0YV56_COCSC	Ribosomal protein L8 component of cytosolic 80S ribosome and 60S large subunit. (256 aa)
	I0YRH3_COCSC	Transcription elongation factor SPT5. (1114 aa)
	I0YR08_COCSC	Eukaryotic translation initiation factor 5A. (165 aa)
	I0YQL1_COCSC	Translation elongation factor P. (187 aa)
	I0YQJ8_COCSC	Ribosomal protein L2. (348 aa)
	rpl2	Ribosomal protein L2. (275 aa)

Your Current Organism:

Coccomyxa subellipsoidea

NCBI taxonomy Id: 574566
Other names: C. subellipsoidea C-169, Chlorella vulgaris C-169, Coccomyxa sp. C-169, Coccomyxa subellipsoidea C-169

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I0YQJ8_COCSC	I0YQL1_COCSC	I0YQJ8	I0YQL1	Ribosomal protein L2.	Translation elongation factor P.	0.695
I0YQJ8_COCSC	I0YR08_COCSC	I0YQJ8	I0YR08	Ribosomal protein L2.	Eukaryotic translation initiation factor 5A.	0.695
I0YQJ8_COCSC	I0YSN7_COCSC	I0YQJ8	I0YSN7	Ribosomal protein L2.	Ribosomal protein L24.	0.887
I0YQJ8_COCSC	I0YXY6_COCSC	I0YQJ8	I0YXY6	Ribosomal protein L2.	Ribosomal protein L6 component of cytosolic 80S ribosome and 60S large subunit.	0.834
I0YQJ8_COCSC	I0YZL0_COCSC	I0YQJ8	I0YZL0	Ribosomal protein L2.	Ribosomal protein L24; Belongs to the universal ribosomal protein uL24 family.	0.954
I0YQJ8_COCSC	I0Z4H8_COCSC	I0YQJ8	I0Z4H8	Ribosomal protein L2.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.866
I0YQJ8_COCSC	I0Z5V1_COCSC	I0YQJ8	I0Z5V1	Ribosomal protein L2.	Ribosomal protein L14 component of cytosolic 80S ribosome and 60S large subunit.	0.834
I0YQJ8_COCSC	I0Z6P7_COCSC	I0YQJ8	I0Z6P7	Ribosomal protein L2.	Organellar elongation factor P.	0.695
I0YQL1_COCSC	I0YQJ8_COCSC	I0YQL1	I0YQJ8	Translation elongation factor P.	Ribosomal protein L2.	0.695
I0YQL1_COCSC	I0YSN7_COCSC	I0YQL1	I0YSN7	Translation elongation factor P.	Ribosomal protein L24.	0.710
I0YQL1_COCSC	I0YV56_COCSC	I0YQL1	I0YV56	Translation elongation factor P.	Ribosomal protein L8 component of cytosolic 80S ribosome and 60S large subunit.	0.695
I0YQL1_COCSC	I0YXY6_COCSC	I0YQL1	I0YXY6	Translation elongation factor P.	Ribosomal protein L6 component of cytosolic 80S ribosome and 60S large subunit.	0.650
I0YQL1_COCSC	I0YZL0_COCSC	I0YQL1	I0YZL0	Translation elongation factor P.	Ribosomal protein L24; Belongs to the universal ribosomal protein uL24 family.	0.710
I0YQL1_COCSC	I0Z4H8_COCSC	I0YQL1	I0Z4H8	Translation elongation factor P.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.766
I0YQL1_COCSC	I0Z5V1_COCSC	I0YQL1	I0Z5V1	Translation elongation factor P.	Ribosomal protein L14 component of cytosolic 80S ribosome and 60S large subunit.	0.650
I0YQL1_COCSC	rpl2	I0YQL1	E9NPU4	Translation elongation factor P.	Ribosomal protein L2.	0.695
I0YR08_COCSC	I0YQJ8_COCSC	I0YR08	I0YQJ8	Eukaryotic translation initiation factor 5A.	Ribosomal protein L2.	0.695
I0YR08_COCSC	I0YSN7_COCSC	I0YR08	I0YSN7	Eukaryotic translation initiation factor 5A.	Ribosomal protein L24.	0.960
I0YR08_COCSC	I0YV56_COCSC	I0YR08	I0YV56	Eukaryotic translation initiation factor 5A.	Ribosomal protein L8 component of cytosolic 80S ribosome and 60S large subunit.	0.968
I0YR08_COCSC	I0YXY6_COCSC	I0YR08	I0YXY6	Eukaryotic translation initiation factor 5A.	Ribosomal protein L6 component of cytosolic 80S ribosome and 60S large subunit.	0.980