(17 nodes) Respirasome network (Bradyrhizobium sp. AT1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KYG19349.1	ETC complex I subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (101 aa)
	KYG19416.1	Cytochrome C oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology. (540 aa)
	KYG19417.1	Cytochrome C oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology. (189 aa)
	KYG19733.1	NADH dehydrogenase; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family. (441 aa)
	KYG19734.1	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa)
	KYG20882.1	Derived by automated computational analysis using gene prediction method: Protein Homology. (150 aa)
	KYG20951.1	ATP synthase subunit E; Derived by automated computational analysis using gene prediction method: Protein Homology. (158 aa)
	KYG20952.1	Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (518 aa)
	KYG21296.1	Cytochrome Cbb3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. (291 aa)
	KYG21299.1	Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family. (549 aa)
	KYG25056.1	Cytochrome o ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family. (666 aa)
	KYG21338.1	Ubiquinol oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)
	KYG21534.1	Cytochrome C; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (687 aa)
	KYG22327.1	Cytochrome C oxidase subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. (539 aa)
	KYG22432.1	Cytochrome O ubiquinol oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (386 aa)
	KYG22433.1	Cytochrome o ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family. (665 aa)
	KYG22704.1	Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (132 aa)

Your Current Organism:

Bradyrhizobium sp. AT1

NCBI taxonomy Id: 574934
Other names: B. sp. AT1

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KYG19349.1	KYG21534.1	SE92_02975	SE92_15745	ETC complex I subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome C; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.705
KYG19416.1	KYG19417.1	SE92_03365	SE92_03370	Cytochrome C oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome C oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KYG19416.1	KYG19733.1	SE92_03365	SE92_05200	Cytochrome C oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH dehydrogenase; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.	0.869
KYG19416.1	KYG19734.1	SE92_03365	SE92_05205	Cytochrome C oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
KYG19416.1	KYG20882.1	SE92_03365	SE92_11975	Cytochrome C oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.756
KYG19416.1	KYG20951.1	SE92_03365	SE92_12375	Cytochrome C oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP synthase subunit E; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.899
KYG19416.1	KYG20952.1	SE92_03365	SE92_12380	Cytochrome C oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.	Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.869
KYG19416.1	KYG21296.1	SE92_03365	SE92_14290	Cytochrome C oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome Cbb3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.	0.896
KYG19416.1	KYG21299.1	SE92_03365	SE92_14305	Cytochrome C oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.	0.708
KYG19416.1	KYG21338.1	SE92_03365	SE92_14550	Cytochrome C oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ubiquinol oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
KYG19416.1	KYG21534.1	SE92_03365	SE92_15745	Cytochrome C oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome C; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.999
KYG19416.1	KYG22327.1	SE92_03365	SE92_20590	Cytochrome C oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome C oxidase subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.	0.891
KYG19416.1	KYG22432.1	SE92_03365	SE92_21260	Cytochrome C oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome O ubiquinol oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
KYG19416.1	KYG22433.1	SE92_03365	SE92_21265	Cytochrome C oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome o ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.	0.508
KYG19416.1	KYG22704.1	SE92_03365	SE92_22845	Cytochrome C oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.851
KYG19416.1	KYG25056.1	SE92_03365	SE92_14545	Cytochrome C oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome o ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.	0.530
KYG19417.1	KYG19416.1	SE92_03370	SE92_03365	Cytochrome C oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome C oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KYG19417.1	KYG19733.1	SE92_03370	SE92_05200	Cytochrome C oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH dehydrogenase; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.	0.818
KYG19417.1	KYG19734.1	SE92_03370	SE92_05205	Cytochrome C oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.822
KYG19417.1	KYG20882.1	SE92_03370	SE92_11975	Cytochrome C oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778