STRINGSTRING
VS_0121 VS_0121 VS_0347 VS_0347 VS_0470 VS_0470 gltB gltB VS_0472 VS_0472 VS_0473 VS_0473 VS_0474 VS_0474 mnmC mnmC VS_0938 VS_0938 VS_0958 VS_0958 VS_1237 VS_1237 VS_1421 VS_1421 VS_1558 VS_1558 VS_1833 VS_1833 VS_1891 VS_1891 VS_1947 VS_1947 VS_2138 VS_2138 VS_2193 VS_2193 glsA glsA VS_II0267 VS_II0267 VS_II0274 VS_II0274 VS_II0617 VS_II0617 VS_II1477 VS_II1477
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VS_0121Glutamine synthetase. (469 aa)
VS_0347Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (270 aa)
VS_0470Glutamate synthase beta subunit. (481 aa)
gltBGlutamate synthase, large subunit. (1342 aa)
VS_0472Putative glutamate synthase precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (244 aa)
VS_0473Glutamate synthase [NADPH] small chain. (489 aa)
VS_0474Glutamate synthase [NADPH] large chain. (1515 aa)
mnmCHypothetical protein; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the C-terminal section; belongs to the DAO family. (716 aa)
VS_09382,4-dienoyl-CoA reductase [NADPH]. (670 aa)
VS_0958Alcohol dehydrogenase/acetaldehyde dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. (902 aa)
VS_1237Aldehyde dehydrogenase; Function of homologous gene experimentally demonstrated in another organism; enzyme; Belongs to the aldehyde dehydrogenase family. (499 aa)
VS_1421NAD-specific glutamate dehydrogenase. (1613 aa)
VS_1558Putative amidohydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (248 aa)
VS_1833Glutamate decarboxylase. (547 aa)
VS_1891Cytochrome P450; Function of homologous gene experimentally demonstrated in another organism; structure; Belongs to the cytochrome P450 family. (457 aa)
VS_1947Diaminobutyrate--2-oxoglutarate aminotransferase. (1006 aa)
VS_2138Putative glutamate synthetase; Belongs to the glutamate synthase family. (520 aa)
VS_2193Probable aminotransferase yfbQ. (410 aa)
glsAGlutaminase; Belongs to the glutaminase family. (306 aa)
VS_II0267Succinate-semialdehyde dehydrogenase [NADP+]; Belongs to the aldehyde dehydrogenase family. (475 aa)
VS_II0274Flavodoxin reductase family 1 protein. (618 aa)
VS_II0617Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (501 aa)
VS_II1477Putative dehydrogenase. (227 aa)
Your Current Organism:
Vibrio tasmaniensis
NCBI taxonomy Id: 575788
Other names: V. tasmaniensis LGP32, Vibrio lentus MEL32, Vibrio splendidus LGP32, Vibrio tasmaniensis LGP32
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