STRINGSTRING
uspB uspB VS_0113 VS_0113 yihI yihI VS_0115 VS_0115 VS_0129 VS_0129 VS_0130 VS_0130 VS_0237 VS_0237 VS_0274 VS_0274 VS_0276 VS_0276 VS_0283 VS_0283 VS_0286 VS_0286 VS_0289 VS_0289 VS_0408 VS_0408 VS_0409 VS_0409 VS_0427 VS_0427 VS_0463 VS_0463 VS_0464 VS_0464 VS_0465 VS_0465 mutH mutH VS_0543 VS_0543 VS_0626 VS_0626 VS_0640 VS_0640 VS_0690 VS_0690 VS_0792 VS_0792 VS_0793 VS_0793 VS_0794 VS_0794 VS_0848 VS_0848 VS_0867 VS_0867 VS_0868 VS_0868 VS_0893 VS_0893 VS_0894 VS_0894 VS_0895 VS_0895 VS_0913 VS_0913 VS_0934 VS_0934 VS_0935 VS_0935 VS_0949 VS_0949 VS_0950 VS_0950 VS_0951 VS_0951 VS_0999 VS_0999 VS_1004 VS_1004 fadR fadR VS_1049 VS_1049 VS_1078 VS_1078 VS_1080 VS_1080 mukF mukF mukE mukE VS_1096 VS_1096 VS_1111 VS_1111 alaE alaE VS_1211 VS_1211 VS_1232 VS_1232 VS_1240 VS_1240 proQ proQ VS_1417 VS_1417 zapC zapC matP matP VS_1512 VS_1512 VS_1618 VS_1618 VS_1671 VS_1671 VS_1686 VS_1686 VS_1714 VS_1714 VS_1715 VS_1715 VS_1784 VS_1784 tfoX tfoX VS_1837 VS_1837 VS_1916 VS_1916 VS_1935 VS_1935 VS_1958 VS_1958 VS_1960 VS_1960 VS_2051 VS_2051 VS_2052 VS_2052 lapB lapB lapA lapA VS_2070 VS_2070 VS_2073 VS_2073 VS_2081 VS_2081 VS_2139 VS_2139 VS_2229 VS_2229 VS_2236 VS_2236 VS_2251 VS_2251 seqA seqA VS_2295 VS_2295 VS_2296 VS_2296 VS_2297 VS_2297 VS_2298 VS_2298 VS_2299 VS_2299 VS_2323 VS_2323 VS_2332 VS_2332 VS_2356 VS_2356 VS_2361 VS_2361 VS_2367 VS_2367 VS_2370 VS_2370 VS_2371 VS_2371 VS_2372 VS_2372 VS_2375 VS_2375 VS_2387 VS_2387 VS_2388 VS_2388 syd syd VS_2391 VS_2391 crl crl VS_2423 VS_2423 VS_2457 VS_2457 VS_2459 VS_2459 VS_2477 VS_2477 ompU ompU VS_2521 VS_2521 VS_2620 VS_2620 lepA lepA VS_2622 VS_2622 VS_2623 VS_2623 VS_2624 VS_2624 VS_2625 VS_2625 VS_2626 VS_2626 VS_2632 VS_2632 rraB rraB VS_2779 VS_2779 VS_2785 VS_2785 VS_2801 VS_2801 VS_2841 VS_2841 VS_2847 VS_2847 VS_2869 VS_2869 VS_2870 VS_2870 metJ metJ zapB zapB VS_2909 VS_2909 VS_2956 VS_2956 VS_2983 VS_2983 VS_3001 VS_3001 VS_3002 VS_3002 VS_3027 VS_3027 VS_3039 VS_3039 VS_3040 VS_3040 VS_3041 VS_3041 VS_3116 VS_3116 VS_3136 VS_3136 VS_II0001 VS_II0001 VS_II0002 VS_II0002 VS_II0004 VS_II0004 VS_II0042 VS_II0042 VS_II0151 VS_II0151 malT malT VS_II0310 VS_II0310 VS_II0323 VS_II0323 VS_II0324 VS_II0324 VS_II0351 VS_II0351 VS_II0416 VS_II0416 VS_II0448 VS_II0448 VS_II0461 VS_II0461 VS_II0466 VS_II0466 VS_II0528 VS_II0528 VS_II0529 VS_II0529 VS_II0603 VS_II0603 VS_II0640 VS_II0640 VS_II0641 VS_II0641 VS_II0647 VS_II0647 VS_II0730 VS_II0730 VS_II0734 VS_II0734 VS_II0735 VS_II0735 VS_II0736 VS_II0736 VS_II0737 VS_II0737 VS_II0738 VS_II0738 VS_II0739 VS_II0739 VS_II0785 VS_II0785 VS_II0802 VS_II0802 VS_II0867 VS_II0867 VS_II0881 VS_II0881 VS_II1023 VS_II1023 VS_II1094 VS_II1094 VS_II1095 VS_II1095 VS_II1096 VS_II1096 VS_II1117 VS_II1117 VS_II1128 VS_II1128 VS_II1130 VS_II1130 VS_II1131 VS_II1131 VS_II1132 VS_II1132 VS_II1133 VS_II1133 VS_II1195 VS_II1195 VS_II1248 VS_II1248 VS_II1249 VS_II1249 VS_II1250 VS_II1250 VS_II1251 VS_II1251 VS_II1281 VS_II1281 VS_II1325 VS_II1325 VS_II1436 VS_II1436 VS_II1443 VS_II1443
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
uspBUniversal stress protein B homolog. (107 aa)
VS_0113Methyltransferase-related protein. (212 aa)
yihIHypothetical protein; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis. Belongs to the YihI family. (185 aa)
VS_0115Putative ATPase involved in DNA repair. (162 aa)
VS_0129Hypothetical protein. (52 aa)
VS_0130Hypothetical protein. (617 aa)
VS_0237Chain length determinant protein. (374 aa)
VS_0274Hypothetical protein. (79 aa)
VS_0276Sodium-type polar flagellar protein motX. (211 aa)
VS_0283Hypothetical protein. (330 aa)
VS_0286Hypothetical protein. (402 aa)
VS_0289Hypothetical protein. (153 aa)
VS_0408Putative general secretion pathway protein A. (556 aa)
VS_0409General secretion pathway protein A. (313 aa)
VS_0427Hypothetical protein. (151 aa)
VS_0463Conserved hypothetical protein. (259 aa)
VS_0464Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (281 aa)
VS_0465Putative membrane protein. (205 aa)
mutHDNA mismatch repair protein mutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences. It is involved in DNA mismatch repair. Belongs to the MutH family. (237 aa)
VS_0543Hypothetical protein. (116 aa)
VS_0626Conserved hypothetical protein. (75 aa)
VS_0640Hypothetical protein. (626 aa)
VS_0690Putative lipoprotein. (189 aa)
VS_0792Hypothetical protein. (377 aa)
VS_0793Hypothetical protein. (211 aa)
VS_0794Conserved hypothetical protein. (143 aa)
VS_0848Hypothetical protein. (170 aa)
VS_0867Phosphohistidine phosphatase. (154 aa)
VS_0868Hypothetical protein; Belongs to the UPF0115 family. (196 aa)
VS_0893Hypothetical protein. (257 aa)
VS_0894Hypothetical protein. (176 aa)
VS_0895Conserved hypothetical protein. (87 aa)
VS_0913Hypothetical protein. (91 aa)
VS_0934Hypothetical protein. (271 aa)
VS_0935Hypothetical protein. (93 aa)
VS_0949Hypothetical protein. (598 aa)
VS_0950Hypothetical protein; Belongs to the UPF0352 family. (75 aa)
VS_0951Nucleoid-associated protein ndpA. (334 aa)
VS_0999Hypothetical membrane protein. (150 aa)
VS_1004Preprotein translocase SecA subunit-related protein; Belongs to the UPF0149 family. (206 aa)
fadRFatty acid metabolism regulator protein; Multifunctional regulator of fatty acid metabolism. (279 aa)
VS_1049Hypothetical protein; Belongs to the UPF0304 family. (166 aa)
VS_1078Putative outer membrane protein. (151 aa)
VS_1080Hypothetical protein. (81 aa)
mukFChromosome partition protein mukF; Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Not required for mini-F plasmid partitioning. Probably acts via its interaction with MukB and MukE. Overexpression results in anucleate cells. It has a calcium binding activity. (445 aa)
mukEChromosome partition protein mukE; Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF. (268 aa)
VS_1096Chromosome partition protein mukB; Belongs to the SMC family. MukB subfamily. (1484 aa)
VS_1111Hypothetical protein. (100 aa)
alaEHypothetical protein; Exports L-alanine; Belongs to the AlaE exporter family. (149 aa)
VS_1211Hypothetical protein. (227 aa)
VS_1232Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the UPF0267 family. (104 aa)
VS_1240Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (5042 aa)
proQProtein proQ homolog; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family. (207 aa)
VS_1417Tail-specific protease precursor. (664 aa)
zapCHypothetical protein; Contributes to the efficiency of the cell division process by stabilizing the polymeric form of the cell division protein FtsZ. Acts by promoting interactions between FtsZ protofilaments and suppressing the GTPase activity of FtsZ. (183 aa)
matPHypothetical protein; Required for spatial organization of the terminus region of the chromosome (Ter macrodomain) during the cell cycle. Prevents early segregation of duplicated Ter macrodomains during cell division. Binds specifically to matS, which is a 13 bp signature motif repeated within the Ter macrodomain. (151 aa)
VS_1512Conserved hypothetical protein. (114 aa)
VS_1618Universal stress protein A. (140 aa)
VS_1671Zn-finger domain associated with topoisomerase type I. (226 aa)
VS_1686Hypothetical protein. (191 aa)
VS_1714Putative effector of murein hydrolase LrgA. (81 aa)
VS_1715Putative effector of murein hydrolase LrgB. (225 aa)
VS_1784Hypothetical protein. (176 aa)
tfoXDNA transformation protein; Function of homologous gene experimentally demonstrated in another organism; putative factor. (193 aa)
VS_1837Predicted permease. (560 aa)
VS_1916Conserved hypothetical protein. (266 aa)
VS_1935Putative Cytochrome c biogenesis factor. (209 aa)
VS_1958Conserved hypothetical protein. (255 aa)
VS_1960Hypothetical protein; Belongs to the UPF0263 family. (109 aa)
VS_2051Hypothetical protein. (254 aa)
VS_2052tRNA-(MS[2]IO[6]A)-hydroxylase. (264 aa)
lapBPredicted N-acetylglucosaminyl transferase; Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane; Belongs to the LapB family. (392 aa)
lapAHypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family. (90 aa)
VS_2070Conserved hypothetical protein. (255 aa)
VS_2073Conserved hypothetical protein; Belongs to the UPF0227 family. (179 aa)
VS_2081Hypothetical protein. (388 aa)
VS_2139Hypothetical protein. (206 aa)
VS_2229Hypothetical protein. (198 aa)
VS_2236Putative transcriptional regulator, AraC/XylS family. (1128 aa)
VS_2251Hypothetical protein. (252 aa)
seqAProtein seqA; Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated. (179 aa)
VS_2295Melanin biosynthesis protein TyrA. (307 aa)
VS_2296Hypothetical protein. (158 aa)
VS_2297Hypothetical protein. (114 aa)
VS_2298Putative outer membrane lipoprotein. (110 aa)
VS_2299Uncharacterized protein. (97 aa)
VS_2323Conserved hypothetical protein. (415 aa)
VS_2332Conserved hypothetical protein. (341 aa)
VS_2356Hypothetical UPF0325 protein; Belongs to the UPF0325 family. (127 aa)
VS_2361Acetyltransferase-related protein. (172 aa)
VS_2367Transcriptional regulator. (231 aa)
VS_2370Hypothetical protein; Belongs to the UPF0253 family. (67 aa)
VS_2371Hypothetical protein. (63 aa)
VS_2372Hypothetical protein. (108 aa)
VS_2375Conserved hypothetical protein. (521 aa)
VS_2387Hypothetical protein. (282 aa)
VS_2388Conserved hypothetical protein. (258 aa)
sydProtein syd; Interacts with the SecY protein in vivo. May bind preferentially to an uncomplexed state of SecY, thus functioning either as a chelating agent for excess SecY in the cell or as a regulatory factor that negatively controls the translocase function. Belongs to the Syd family. (181 aa)
VS_2391TPR-repeat-containing protein. (752 aa)
crlTranscriptional regulator; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family. (135 aa)
VS_2423Conserved hypothetical protein. (202 aa)
VS_2457Conserved hypothetical protein. (782 aa)
VS_2459Putative smp protein. (203 aa)
VS_2477Lipoprotein NlpI; May be involved in cell division. (307 aa)
ompUOuter membrane protein, OmpU; Function of homologous gene experimentally demonstrated in another organism; membrane component. (348 aa)
VS_2521Hypothetical protein; Belongs to the UPF0231 family. (127 aa)
VS_2620Signal peptidase I; Belongs to the peptidase S26 family. (298 aa)
lepAGTP-binding protein lepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. (597 aa)
VS_2622sigma-E factor regulatory protein RseC. (156 aa)
VS_2623Sigma-E factor regulatory protein rseB homolog precursor. (320 aa)
VS_2624sigma-E factor negative regulatory protein RseA; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplas [...] (211 aa)
VS_2625RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily. (205 aa)
VS_2626Hypothetical protein. (76 aa)
VS_2632Hypothetical protein. (68 aa)
rraBHypothetical protein; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome. (138 aa)
VS_2779Hypothetical protein. (183 aa)
VS_2785Hypothetical protein. (302 aa)
VS_2801Hypothetical protein. (226 aa)
VS_2841Conserved hypothetical protein. (241 aa)
VS_2847Predicted nucleic-acid-binding protein. (66 aa)
VS_2869DNA adenine methylase. (286 aa)
VS_2870Hypothetical protein. (505 aa)
metJMethionine Repressor metJ; This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis; Belongs to the MetJ family. (106 aa)
zapBConserved hypothetical protein; Non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA. (80 aa)
VS_2909Conserved hypothetical protein. (140 aa)
VS_2956Hypothetical protein. (197 aa)
VS_2983Putative transposase. (130 aa)
VS_3001Hypothetical protein. (123 aa)
VS_3002Transcriptional regulator, TetR family. (213 aa)
VS_3027Putative membrane protein. (220 aa)
VS_3039Hypothetical protein. (155 aa)
VS_3040Predicted membrane protein. (514 aa)
VS_3041Hypothetical protein. (198 aa)
VS_3116Hypothetical protein. (89 aa)
VS_3136Hypothetical protein. (87 aa)
VS_II0001ParA family protein. (405 aa)
VS_II0002ParB family protein; Belongs to the ParB family. (324 aa)
VS_II0004Conserved hypothetical protein. (556 aa)
VS_II0042Putative Bor protein precursor of bacteriophage. (98 aa)
VS_II0151Hypothetical protein. (110 aa)
malTHTH-type transcriptional regulator malT (ATP-dependent transcriptional activator malT); Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto- oligosaccharides. Specifically binds to the promoter region of its target genes, recognizing a short DNA motif called the MalT box. (907 aa)
VS_II0310Outer membrane protein. (331 aa)
VS_II0323Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (521 aa)
VS_II0324Malate synthase. (200 aa)
VS_II0351Hypothetical UPF0265 protein; Belongs to the UPF0265 family. (104 aa)
VS_II0416Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (84 aa)
VS_II0448Transporter, drug/metabolite exporter family. (310 aa)
VS_II0461Helicase IV. (691 aa)
VS_II0466Conserved hypothetical protein. (1005 aa)
VS_II0528Putative transcriptional regulator, AraC/XylS family. (369 aa)
VS_II0529Enterobactin receptor; Function of homologous gene experimentally demonstrated in another organism; receptor. (668 aa)
VS_II0603Probable anaerobic C4-dicarboxylate transporter dcuC. (459 aa)
VS_II0640Putative ATPase. (551 aa)
VS_II0641Hypothetical protein. (481 aa)
VS_II0647Lipase-related protein. (262 aa)
VS_II0730Hypothetical protein. (122 aa)
VS_II0734Hypothetical protein. (24 aa)
VS_II0735Sensor histidine kinase. (490 aa)
VS_II0736Transcriptional regulator. (219 aa)
VS_II0737Conserved hypothetical protein. (292 aa)
VS_II0738Conserved hypothetical protein. (384 aa)
VS_II0739Conserved hypothetical protein. (50 aa)
VS_II0785Conserved hypothetical protein. (164 aa)
VS_II0802Tyrosine-specific transport protein. (407 aa)
VS_II0867Hypothetical protein. (352 aa)
VS_II0881Hypothetical protein; Belongs to the UPF0319 family. (217 aa)
VS_II1023Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (3537 aa)
VS_II1094Hypothetical protein. (349 aa)
VS_II1095Conserved hypothetical protein. (83 aa)
VS_II1096Conserved hypothetical protein. (365 aa)
VS_II1117Putative lactoylglutathione lyase. (151 aa)
VS_II1128Receptor for a ferric siderophore of unknown origin; Function of homologous gene experimentally demonstrated in another organism; transporter. (678 aa)
VS_II1130Vibrioferrin biosynthesis protein PvsB; Function of homologous gene experimentally demonstrated in another organism; factor. (603 aa)
VS_II1131Multi-drug efflux pump homolog PvsC; Function of homologous gene experimentally demonstrated in another organism; transporter. (405 aa)
VS_II1132Vibrioferrin biosynthesis protein PvsD; Function of homologous gene experimentally demonstrated in another organism; factor. (621 aa)
VS_II1133Vibrioferrin biosynthesis protein PvsE; Function of homologous gene experimentally demonstrated in another organism; factor; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (400 aa)
VS_II1195Hypothetical protein. (164 aa)
VS_II1248Conserved hypothetical protein. (199 aa)
VS_II1249Conserved hypothetical protein. (357 aa)
VS_II1250N-acetylglucosaminyltransferase. (441 aa)
VS_II1251Conserved hypothetical protein. (451 aa)
VS_II1281Conserved hypothetical protein. (51 aa)
VS_II1325Putative carboxypeptidase. (236 aa)
VS_II1436Conserved hypothetical protein. (288 aa)
VS_II1443ATPase involved in DNA repair. (118 aa)
Your Current Organism:
Vibrio tasmaniensis
NCBI taxonomy Id: 575788
Other names: V. tasmaniensis LGP32, Vibrio lentus MEL32, Vibrio splendidus LGP32, Vibrio tasmaniensis LGP32
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