(11 nodes) Mixed, incl. Oligopeptide/dipeptide transporter, C-terminal region, and Solute-binding protein family 5, conserved site network (Vibrio tasmaniensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VS_0074	Hypothetical ABC transporter ATP-binding protein. (575 aa)
	VS_0075	Periplasmic dipeptide transport protein precursor. (517 aa)
	VS_0076	Dipeptide transport system permease protein dppB. (325 aa)
	VS_0077	Dipeptide transport system permease protein dppC. (312 aa)
	VS_2506	Peptide ABC transporter, periplasmic peptide-binding protein. (560 aa)
	VS_2507	Peptide ABC transporter, permease protein. (328 aa)
	VS_2508	Peptide ABC transporter, permease protein. (341 aa)
	VS_2509	Oligopeptide transport ATP-binding protein oppD; Belongs to the ABC transporter superfamily. (327 aa)
	VS_2510	Peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily. (331 aa)
	VS_II1528	ABC systems: ATP binding protein. (277 aa)
	VS_II1529	ABC systems: ATP-binding protein; Belongs to the ABC transporter superfamily. (310 aa)

Your Current Organism:

Vibrio tasmaniensis

NCBI taxonomy Id: 575788
Other names: V. tasmaniensis LGP32, Vibrio lentus MEL32, Vibrio splendidus LGP32, Vibrio tasmaniensis LGP32

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
VS_0074	VS_0075	Hypothetical ABC transporter ATP-binding protein.	Periplasmic dipeptide transport protein precursor.	0.916
VS_0074	VS_0076	Hypothetical ABC transporter ATP-binding protein.	Dipeptide transport system permease protein dppB.	0.961
VS_0074	VS_0077	Hypothetical ABC transporter ATP-binding protein.	Dipeptide transport system permease protein dppC.	0.983
VS_0074	VS_2506	Hypothetical ABC transporter ATP-binding protein.	Peptide ABC transporter, periplasmic peptide-binding protein.	0.744
VS_0074	VS_2507	Hypothetical ABC transporter ATP-binding protein.	Peptide ABC transporter, permease protein.	0.923
VS_0074	VS_2508	Hypothetical ABC transporter ATP-binding protein.	Peptide ABC transporter, permease protein.	0.965
VS_0074	VS_2509	Hypothetical ABC transporter ATP-binding protein.	Oligopeptide transport ATP-binding protein oppD; Belongs to the ABC transporter superfamily.	0.785
VS_0074	VS_2510	Hypothetical ABC transporter ATP-binding protein.	Peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.849
VS_0074	VS_II1528	Hypothetical ABC transporter ATP-binding protein.	ABC systems: ATP binding protein.	0.775
VS_0074	VS_II1529	Hypothetical ABC transporter ATP-binding protein.	ABC systems: ATP-binding protein; Belongs to the ABC transporter superfamily.	0.579
VS_0075	VS_0074	Periplasmic dipeptide transport protein precursor.	Hypothetical ABC transporter ATP-binding protein.	0.916
VS_0075	VS_0076	Periplasmic dipeptide transport protein precursor.	Dipeptide transport system permease protein dppB.	0.979
VS_0075	VS_0077	Periplasmic dipeptide transport protein precursor.	Dipeptide transport system permease protein dppC.	0.977
VS_0075	VS_2506	Periplasmic dipeptide transport protein precursor.	Peptide ABC transporter, periplasmic peptide-binding protein.	0.798
VS_0075	VS_2507	Periplasmic dipeptide transport protein precursor.	Peptide ABC transporter, permease protein.	0.875
VS_0075	VS_2508	Periplasmic dipeptide transport protein precursor.	Peptide ABC transporter, permease protein.	0.869
VS_0075	VS_2509	Periplasmic dipeptide transport protein precursor.	Oligopeptide transport ATP-binding protein oppD; Belongs to the ABC transporter superfamily.	0.755
VS_0075	VS_2510	Periplasmic dipeptide transport protein precursor.	Peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.823
VS_0075	VS_II1528	Periplasmic dipeptide transport protein precursor.	ABC systems: ATP binding protein.	0.732
VS_0075	VS_II1529	Periplasmic dipeptide transport protein precursor.	ABC systems: ATP-binding protein; Belongs to the ABC transporter superfamily.	0.643