(8 nodes) Mixed, incl. MalK, OB fold domain, and ABC-type carbohydrate transporter activity network (Vibrio tasmaniensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VS_0875	ABC transporter: substrate binding protein precursor. (415 aa)
	VS_0876	ABC transporter: transmembrane protein. (312 aa)
	VS_0877	ABC transporter: Transmembrane protein. (285 aa)
	VS_0878	ABC transporter: ATP-binding protein; Belongs to the ABC transporter superfamily. (370 aa)
	VS_II1387	ABC-type sugar transport system, ATP-binding protein; Belongs to the ABC transporter superfamily. (363 aa)
	VS_II1389	ABC transporter: transmembrane protein. (297 aa)
	VS_II1390	ABC transporter: permease component. (328 aa)
	VS_II1391	ABC transporter: Substrate-binding protein precursor. (415 aa)

Your Current Organism:

Vibrio tasmaniensis

NCBI taxonomy Id: 575788
Other names: V. tasmaniensis LGP32, Vibrio lentus MEL32, Vibrio splendidus LGP32, Vibrio tasmaniensis LGP32

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
VS_0875	VS_0876	ABC transporter: substrate binding protein precursor.	ABC transporter: transmembrane protein.	0.982
VS_0875	VS_0877	ABC transporter: substrate binding protein precursor.	ABC transporter: Transmembrane protein.	0.998
VS_0875	VS_0878	ABC transporter: substrate binding protein precursor.	ABC transporter: ATP-binding protein; Belongs to the ABC transporter superfamily.	0.904
VS_0875	VS_II1387	ABC transporter: substrate binding protein precursor.	ABC-type sugar transport system, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.777
VS_0875	VS_II1389	ABC transporter: substrate binding protein precursor.	ABC transporter: transmembrane protein.	0.844
VS_0875	VS_II1390	ABC transporter: substrate binding protein precursor.	ABC transporter: permease component.	0.834
VS_0875	VS_II1391	ABC transporter: substrate binding protein precursor.	ABC transporter: Substrate-binding protein precursor.	0.412
VS_0876	VS_0875	ABC transporter: transmembrane protein.	ABC transporter: substrate binding protein precursor.	0.982
VS_0876	VS_0877	ABC transporter: transmembrane protein.	ABC transporter: Transmembrane protein.	0.995
VS_0876	VS_0878	ABC transporter: transmembrane protein.	ABC transporter: ATP-binding protein; Belongs to the ABC transporter superfamily.	0.998
VS_0876	VS_II1387	ABC transporter: transmembrane protein.	ABC-type sugar transport system, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.918
VS_0876	VS_II1389	ABC transporter: transmembrane protein.	ABC transporter: transmembrane protein.	0.948
VS_0876	VS_II1391	ABC transporter: transmembrane protein.	ABC transporter: Substrate-binding protein precursor.	0.887
VS_0877	VS_0875	ABC transporter: Transmembrane protein.	ABC transporter: substrate binding protein precursor.	0.998
VS_0877	VS_0876	ABC transporter: Transmembrane protein.	ABC transporter: transmembrane protein.	0.995
VS_0877	VS_0878	ABC transporter: Transmembrane protein.	ABC transporter: ATP-binding protein; Belongs to the ABC transporter superfamily.	0.988
VS_0877	VS_II1387	ABC transporter: Transmembrane protein.	ABC-type sugar transport system, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.919
VS_0877	VS_II1389	ABC transporter: Transmembrane protein.	ABC transporter: transmembrane protein.	0.654
VS_0877	VS_II1390	ABC transporter: Transmembrane protein.	ABC transporter: permease component.	0.963
VS_0877	VS_II1391	ABC transporter: Transmembrane protein.	ABC transporter: Substrate-binding protein precursor.	0.916