STRINGSTRING
VS_0267 VS_0267 VS_0276 VS_0276 VS_0277 VS_0277 VS_0347 VS_0347 lpxC lpxC VS_0561 VS_0561 tadA tadA VS_0788 VS_0788 VS_0809 VS_0809 cheB cheB folD folD VS_0936 VS_0936 VS_0943 VS_0943 VS_1087 VS_1087 VS_1193 VS_1193 hutG hutG hutI hutI VS_1232 VS_1232 speB speB VS_1472 VS_1472 cobB cobB VS_1558 VS_1558 astE astE cdd cdd folE folE tfoX tfoX ribA ribA hisI hisI hisH hisH VS_2079 VS_2079 VS_2110 VS_2110 purU purU VS_2261 VS_2261 dapE dapE ribB ribB VS_2413 VS_2413 VS_2424 VS_2424 VS_2545 VS_2545 VS_2597 VS_2597 pyrG pyrG glsA glsA arcA arcA VS_2845 VS_2845 argE argE arcA-2 arcA-2 purH purH def def VS_II0036 VS_II0036 add add VS_II0174 VS_II0174 pyrC pyrC nadE nadE VS_II0311 VS_II0311 VS_II0327 VS_II0327 folE-2 folE-2 VS_II0753 VS_II0753 VS_II0928 VS_II0928 VS_II1086 VS_II1086 VS_II1145 VS_II1145 VS_II1325 VS_II1325 VS_II1526 VS_II1526
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VS_0267N-acetylmuramoyl-L-alanine amidase. (571 aa)
VS_0276Sodium-type polar flagellar protein motX. (211 aa)
VS_0277Chlorohydrolase/deaminase family protein. (488 aa)
VS_0347Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (270 aa)
lpxCUDP-3-O-acyl-N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family. (305 aa)
VS_0561Hypothetical protein; Belongs to the multicopper oxidase YfiH/RL5 family. (246 aa)
tadAtRNA-specific adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (212 aa)
VS_0788Hypothetical protein. (104 aa)
VS_0809Peptidoglycan hydrolase flgJ. (313 aa)
cheBChemotaxis protein CheB; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (374 aa)
folDFolD bifunctional protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. (285 aa)
VS_0936L-asparaginase I. (338 aa)
VS_0943Histone deacetylase/AcuC/AphA family protein. (306 aa)
VS_1087Hypothetical protein. (196 aa)
VS_1193ThiJ/PfpI. (223 aa)
hutGFormimidoylglutamase; Catalyzes the conversion of N-formimidoyl-L-glutamate to L- glutamate and formamide; Belongs to the arginase family. (357 aa)
hutIImidazolonepropionase. (418 aa)
VS_1232Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the UPF0267 family. (104 aa)
speBAgmatinase (Agmatine ureohydrolase); Function of homologous gene experimentally demonstrated in another organism; enzyme; Belongs to the arginase family. (308 aa)
VS_1472Putative Bax protein. (308 aa)
cobBNAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily. (244 aa)
VS_1558Putative amidohydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (248 aa)
astESuccinylglutamate desuccinylase; Transforms N(2)-succinylglutamate into succinate and glutamate; Belongs to the AspA/AstE family. Succinylglutamate desuccinylase subfamily. (342 aa)
cddCytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis. (295 aa)
folEGTP cyclohydrolase. (212 aa)
tfoXDNA transformation protein; Function of homologous gene experimentally demonstrated in another organism; putative factor. (193 aa)
ribAGTP cyclohydrolase-2; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family. (211 aa)
hisIHistidine biosynthesis bifunctional protein hisIE; In the N-terminal section; belongs to the PRA-CH family. (216 aa)
hisHImidazole glycerol phosphate synthase subunit hisH; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF. (204 aa)
VS_2079Hit family protein. (116 aa)
VS_2110Conserved hypothetical protein. (571 aa)
purUFormyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4). (277 aa)
VS_2261N-acetylglucosamine-6-phosphate deacetylase. (378 aa)
dapESuccinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. (378 aa)
ribB3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. (369 aa)
VS_2413Riboflavin biosynthesis protein ribD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. (374 aa)
VS_2424Conserved hypothetical protein. (348 aa)
VS_2545Protein ampD. (182 aa)
VS_2597Competence-damaged protein CinA; Belongs to the CinA family. (197 aa)
pyrGCTP synthase (UTP--ammonia ligase); Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. (546 aa)
glsAGlutaminase; Belongs to the glutaminase family. (306 aa)
arcAArginine deiminase. (406 aa)
VS_2845Asparaginase. (321 aa)
argEAcetylornithine deacetylase; Belongs to the peptidase M20A family. ArgE subfamily. (378 aa)
arcA-2Arginine deiminase. (407 aa)
purHBifunctional purine biosynthesis protein purH. (530 aa)
defPeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. (206 aa)
VS_II0036N-acyl-D-aspartate/D-glutamate deacylase. (477 aa)
addAdenosine deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family. Adenosine deaminase subfamily. (332 aa)
VS_II0174Conserved hypothetical protein. (414 aa)
pyrCDihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate. (342 aa)
nadENAD synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source. (276 aa)
VS_II0311Putative succinate dehydrogenase subunit Sdh. (337 aa)
VS_II0327Cytosine deaminase. (425 aa)
folE-2GTP cyclohydrolase I. (217 aa)
VS_II0753Conserved hypothetical protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. (237 aa)
VS_II0928Putative metal-dependent hydrolases. (635 aa)
VS_II1086Putative transcriptional activator; Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway; Belongs to the TenA family. (222 aa)
VS_II1145Putative deoxycytidylate deaminase. (147 aa)
VS_II1325Putative carboxypeptidase. (236 aa)
VS_II1526Putative GTP cyclohydrolase II. (186 aa)
Your Current Organism:
Vibrio tasmaniensis
NCBI taxonomy Id: 575788
Other names: V. tasmaniensis LGP32, Vibrio lentus MEL32, Vibrio splendidus LGP32, Vibrio tasmaniensis LGP32
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