(14 nodes) Prokaryotic N-terminal methylation site network (Vibrio tasmaniensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VS_0654	Putative type IV pilin. (168 aa)
	VS_0141	Type II secretory pathway, component EpsJ. (267 aa)
	VS_0138	Type II secretory pathway, pseudopilin EpsG. (147 aa)
	VS_0338	Tfp pilus assembly protein PilW. (240 aa)
	VS_0337	MSHA pilin protein MshD. (184 aa)
	VS_0336	MSHA pilin protein MshC. (183 aa)
	VS_0335	MSHA pilin protein MshA. (183 aa)
	VS_0140	Type II secretory pathway, pseudopilin EpsI. (131 aa)
	VS_0139	Type II secretory pathway, pseudopilin EpsH. (197 aa)
	VS_1003	Hypothetical protein. (180 aa)
	pilA	Fimbrial protein precursor; Function of homologous gene experimentally demonstrated in another organism; putative transporter; Belongs to the N-Me-Phe pilin family. (136 aa)
	VS_0334	MSHA pilin protein MshB. (191 aa)
	VS_0657	Putative type IV pilin. (149 aa)
	VS_0653	Putative fimbrial assembly protein PilE. (160 aa)

Your Current Organism:

Vibrio tasmaniensis

NCBI taxonomy Id: 575788
Other names: V. tasmaniensis LGP32, Vibrio lentus MEL32, Vibrio splendidus LGP32, Vibrio tasmaniensis LGP32

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VS_0138	VS_0139	VS_0138	VS_0139	Type II secretory pathway, pseudopilin EpsG.	Type II secretory pathway, pseudopilin EpsH.	0.782
VS_0138	VS_0140	VS_0138	VS_0140	Type II secretory pathway, pseudopilin EpsG.	Type II secretory pathway, pseudopilin EpsI.	0.901
VS_0138	VS_0141	VS_0138	VS_0141	Type II secretory pathway, pseudopilin EpsG.	Type II secretory pathway, component EpsJ.	0.984
VS_0138	VS_0334	VS_0138	VS_0334	Type II secretory pathway, pseudopilin EpsG.	MSHA pilin protein MshB.	0.564
VS_0138	VS_0653	VS_0138	VS_0653	Type II secretory pathway, pseudopilin EpsG.	Putative fimbrial assembly protein PilE.	0.702
VS_0138	VS_0654	VS_0138	VS_0654	Type II secretory pathway, pseudopilin EpsG.	Putative type IV pilin.	0.432
VS_0138	VS_1003	VS_0138	VS_1003	Type II secretory pathway, pseudopilin EpsG.	Hypothetical protein.	0.564
VS_0138	pilA	VS_0138	VS_2547	Type II secretory pathway, pseudopilin EpsG.	Fimbrial protein precursor; Function of homologous gene experimentally demonstrated in another organism; putative transporter; Belongs to the N-Me-Phe pilin family.	0.583
VS_0139	VS_0138	VS_0139	VS_0138	Type II secretory pathway, pseudopilin EpsH.	Type II secretory pathway, pseudopilin EpsG.	0.782
VS_0139	VS_0140	VS_0139	VS_0140	Type II secretory pathway, pseudopilin EpsH.	Type II secretory pathway, pseudopilin EpsI.	0.955
VS_0139	VS_0141	VS_0139	VS_0141	Type II secretory pathway, pseudopilin EpsH.	Type II secretory pathway, component EpsJ.	0.992
VS_0139	VS_0653	VS_0139	VS_0653	Type II secretory pathway, pseudopilin EpsH.	Putative fimbrial assembly protein PilE.	0.418
VS_0139	VS_0654	VS_0139	VS_0654	Type II secretory pathway, pseudopilin EpsH.	Putative type IV pilin.	0.686
VS_0139	pilA	VS_0139	VS_2547	Type II secretory pathway, pseudopilin EpsH.	Fimbrial protein precursor; Function of homologous gene experimentally demonstrated in another organism; putative transporter; Belongs to the N-Me-Phe pilin family.	0.446
VS_0140	VS_0138	VS_0140	VS_0138	Type II secretory pathway, pseudopilin EpsI.	Type II secretory pathway, pseudopilin EpsG.	0.901
VS_0140	VS_0139	VS_0140	VS_0139	Type II secretory pathway, pseudopilin EpsI.	Type II secretory pathway, pseudopilin EpsH.	0.955
VS_0140	VS_0141	VS_0140	VS_0141	Type II secretory pathway, pseudopilin EpsI.	Type II secretory pathway, component EpsJ.	0.999
VS_0140	pilA	VS_0140	VS_2547	Type II secretory pathway, pseudopilin EpsI.	Fimbrial protein precursor; Function of homologous gene experimentally demonstrated in another organism; putative transporter; Belongs to the N-Me-Phe pilin family.	0.446
VS_0141	VS_0138	VS_0141	VS_0138	Type II secretory pathway, component EpsJ.	Type II secretory pathway, pseudopilin EpsG.	0.984
VS_0141	VS_0139	VS_0141	VS_0139	Type II secretory pathway, component EpsJ.	Type II secretory pathway, pseudopilin EpsH.	0.992