(9 nodes) Exonuclease, RNase T/DNA polymerase III network (Vibrio tasmaniensis)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VS_1784	Hypothetical protein. (176 aa)
	VS_1713	Exodeoxyribonuclease I. (474 aa)
	dnaQ	DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. (255 aa)
	VS_1822	DNA polymerase III polC-type. (238 aa)
	orn	Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. (181 aa)
	VS_II1160	DNA polymerase III, alpha subunit. (207 aa)
	VS_1253	Putative exonuclease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (238 aa)
	VS_2941	Putative DNA polymerase III, epsilon subunit. (210 aa)
	rnt	Ribonuclease T (RNase T); Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis. (241 aa)

Your Current Organism:

Vibrio tasmaniensis

NCBI taxonomy Id: 575788
Other names: V. tasmaniensis LGP32, Vibrio lentus MEL32, Vibrio splendidus LGP32, Vibrio tasmaniensis LGP32

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VS_1253	VS_1822	VS_1253	VS_1822	Putative exonuclease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	DNA polymerase III polC-type.	0.762
VS_1253	VS_2941	VS_1253	VS_2941	Putative exonuclease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative DNA polymerase III, epsilon subunit.	0.760
VS_1253	VS_II1160	VS_1253	VS_II1160	Putative exonuclease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	DNA polymerase III, alpha subunit.	0.760
VS_1253	dnaQ	VS_1253	VS_2324	Putative exonuclease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.	0.746
VS_1822	VS_1253	VS_1822	VS_1253	DNA polymerase III polC-type.	Putative exonuclease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.762
VS_1822	VS_2941	VS_1822	VS_2941	DNA polymerase III polC-type.	Putative DNA polymerase III, epsilon subunit.	0.730
VS_1822	VS_II1160	VS_1822	VS_II1160	DNA polymerase III polC-type.	DNA polymerase III, alpha subunit.	0.750
VS_1822	dnaQ	VS_1822	VS_2324	DNA polymerase III polC-type.	DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.	0.747
VS_1822	orn	VS_1822	VS_0255	DNA polymerase III polC-type.	Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family.	0.528
VS_2941	VS_1253	VS_2941	VS_1253	Putative DNA polymerase III, epsilon subunit.	Putative exonuclease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.760
VS_2941	VS_1822	VS_2941	VS_1822	Putative DNA polymerase III, epsilon subunit.	DNA polymerase III polC-type.	0.730
VS_2941	VS_II1160	VS_2941	VS_II1160	Putative DNA polymerase III, epsilon subunit.	DNA polymerase III, alpha subunit.	0.687
VS_2941	orn	VS_2941	VS_0255	Putative DNA polymerase III, epsilon subunit.	Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family.	0.528
VS_II1160	VS_1253	VS_II1160	VS_1253	DNA polymerase III, alpha subunit.	Putative exonuclease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.760
VS_II1160	VS_1822	VS_II1160	VS_1822	DNA polymerase III, alpha subunit.	DNA polymerase III polC-type.	0.750
VS_II1160	VS_2941	VS_II1160	VS_2941	DNA polymerase III, alpha subunit.	Putative DNA polymerase III, epsilon subunit.	0.687
VS_II1160	dnaQ	VS_II1160	VS_2324	DNA polymerase III, alpha subunit.	DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.	0.760
dnaQ	VS_1253	VS_2324	VS_1253	DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.	Putative exonuclease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.746
dnaQ	VS_1822	VS_2324	VS_1822	DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.	DNA polymerase III polC-type.	0.747
dnaQ	VS_II1160	VS_2324	VS_II1160	DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.	DNA polymerase III, alpha subunit.	0.760