66 items (Vibrio tasmaniensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	phnC	ABC transporter: ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family. (256 aa)
	VS_II1377	ABC transporter: ATP-binding protein; Belongs to the ABC transporter superfamily. (542 aa)
	VS_II1387	ABC-type sugar transport system, ATP-binding protein; Belongs to the ABC transporter superfamily. (363 aa)
	VS_II1492	ABC transporter: ATP-binding protein. (237 aa)
	VS_II1529	ABC systems: ATP-binding protein; Belongs to the ABC transporter superfamily. (310 aa)
	VS_II1528	ABC systems: ATP binding protein. (277 aa)
	VS_0007	Probable amino-acid ABC transporter ATP-binding protein. (245 aa)
	VS_0074	Hypothetical ABC transporter ATP-binding protein. (575 aa)
	uvrA	UvrABC system protein A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (943 aa)
	VS_0551	ABC transporter ATP-binding protein. (555 aa)
	pstB	ABC transporter, ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family. (272 aa)
	ccmA	Cytochrome c biogenesis ATP-binding export protein ccmA (heme exporter protein A); Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. (205 aa)
	VS_0878	ABC transporter: ATP-binding protein; Belongs to the ABC transporter superfamily. (370 aa)
	VS_0993	Oligopeptide transport ATP-binding protein oppD; Belongs to the ABC transporter superfamily. (323 aa)
	VS_0994	Oligopeptide transport ATP-binding protein oppF; Belongs to the ABC transporter superfamily. (331 aa)
	VS_1054	Histidine transport ATP-binding protein hisP. (256 aa)
	viuC	ABC transporter: ATP-binding protein; Function of homologous gene experimentally demonstrated in another organism; transporter. (270 aa)
	VS_1179	ABC-type proline/glycine betaine transport system, ATPase component. (395 aa)
	VS_1184	Transport ATP-binding protein cydC. (573 aa)
	VS_1185	Transport ATP-binding protein cydD. (594 aa)
	VS_1235	Putative ABC-type transport system, ATPase component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (524 aa)
	VS_1400	General L-amino acid transport ATP-binding protein. (254 aa)
	VS_1414	ATP-binding/permease protein. (598 aa)
	VS_1426	ABC transporter ATP-binding protein. (638 aa)
	potA	Spermidine/putrescine import ATP-binding protein potA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (371 aa)
	VS_1501	ABC transporter, ATP-binding protein. (239 aa)
	VS_1525	ABC transporter: ATP binding protein. (410 aa)
	VS_1564	ABC transporter: ATP-binding protein. (247 aa)
	VS_1565	ABC transporter: transmembrane and ATP binding protein. (611 aa)
	VS_1903	Probable ATP-dependent transporter sufC. (248 aa)
	VS_1997	Peptide transport system ATP-binding protein sapF. (260 aa)
	msbA	Transport ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. (589 aa)
	lolD	Lipoprotein-releasing system ATP-binding protein lolD; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner. (230 aa)
	VS_2112	Ferrichrome transport ATP-binding protein fhuC. (255 aa)
	metN	D-methionine transport ATP-binding protein metN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (344 aa)
	VS_2509	Oligopeptide transport ATP-binding protein oppD; Belongs to the ABC transporter superfamily. (327 aa)
	VS_2510	Peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily. (331 aa)
	VS_2516	ABC-type spermidine/putrescine transport system, ATPase component; Belongs to the ABC transporter superfamily. (342 aa)
	VS_2535	Hypothetical ABC transporter ATP-binding protein. (305 aa)
	VS_2586	ABC transporter; Belongs to the ABC transporter superfamily. (373 aa)
	VS_2750	ABC transporter: ATP-binding protein. (279 aa)
	VS_2756	Probable ABC transporter ATP-binding protein. (241 aa)
	thiQ	Thiamine transport ATP-binding protein thiQ; Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Thiamine importer (TC 3.A.1.19.1) family. (235 aa)
	VS_2850	ABC transporter, ATP-binding protein. (640 aa)
	ftsE	Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division. (225 aa)
	VS_II0026	ABC transporters: Transmembrane and ATP-binding protein. (616 aa)
	VS_II0061	ABC transporter: ATP binding protein. (395 aa)
	VS_II0188	ABC transporter: two domain ATP-binding protein; Function of strongly homologous gene; transporter. (564 aa)
	pstB-2	ABC transporter: ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family. (249 aa)
	malK	ABC transporter: ATP-binding protein; Part of the ABC transporter complex MalEFGK involved in maltose/maltodextrin import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Maltooligosaccharide importer (TC 3.A.1.1.1) family. (370 aa)
	VS_II0247	ABC transporter: ATP binding protein. (237 aa)
	VS_II0401	ABC transporter: ATP-binding protein; Belongs to the ABC transporter superfamily. (369 aa)
	VS_II0421	ABC transport system, Transmembrane and ATP-binding site (ABC-IM). (587 aa)
	VS_II0498	ABC transporter: ATP-binding protein. (261 aa)
	VS_II0534	ABC transporter: ATP binding protein. (248 aa)
	VS_II0691	ABC transporter: ATP-binding protein. (244 aa)
	VS_II0718	Hypothetical ABC transporter ATP-binding protein. (527 aa)
	modC	Molybdenum import ATP-binding protein modC; Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Molybdate importer (TC 3.A.1.8) family. (385 aa)
	VS_II0758	ABC transporter, ATP-binding protein. (224 aa)
	VS_II0932	ABC transporter: two domain ATP-binding protein; Belongs to the ABC transporter superfamily. (549 aa)
	rbsA	ABC transporter: two domain ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family. (501 aa)
	VS_II1067	ABC transporter, ATP-binding protein; Function of homologous gene experimentally demonstrated in another organism; transporter. (254 aa)
	VS_II1089	ABC transporter: ATP binding protein. (252 aa)
	VS_II1123	ABC transporter: ATP-binding protein; Function of homologous gene experimentally demonstrated in another organism; transporter. (257 aa)
	ugpC	ABC-type sugar transport systems, ATPase components; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family. (396 aa)
	VS_II1268	ABC transporter: ATP-binding protein. (486 aa)

Your Current Organism:

Vibrio tasmaniensis

NCBI taxonomy Id: 575788
Other names: V. tasmaniensis LGP32, Vibrio lentus MEL32, Vibrio splendidus LGP32, Vibrio tasmaniensis LGP32

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VS_0007	VS_1414	VS_0007	VS_1414	Probable amino-acid ABC transporter ATP-binding protein.	ATP-binding/permease protein.	0.646
VS_0007	VS_1501	VS_0007	VS_1501	Probable amino-acid ABC transporter ATP-binding protein.	ABC transporter, ATP-binding protein.	0.482
VS_0007	phnC	VS_0007	VS_II1285	Probable amino-acid ABC transporter ATP-binding protein.	ABC transporter: ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.	0.526
VS_0074	VS_0993	VS_0074	VS_0993	Hypothetical ABC transporter ATP-binding protein.	Oligopeptide transport ATP-binding protein oppD; Belongs to the ABC transporter superfamily.	0.770
VS_0074	VS_0994	VS_0074	VS_0994	Hypothetical ABC transporter ATP-binding protein.	Oligopeptide transport ATP-binding protein oppF; Belongs to the ABC transporter superfamily.	0.768
VS_0074	VS_1501	VS_0074	VS_1501	Hypothetical ABC transporter ATP-binding protein.	ABC transporter, ATP-binding protein.	0.692
VS_0074	VS_2509	VS_0074	VS_2509	Hypothetical ABC transporter ATP-binding protein.	Oligopeptide transport ATP-binding protein oppD; Belongs to the ABC transporter superfamily.	0.785
VS_0074	VS_2510	VS_0074	VS_2510	Hypothetical ABC transporter ATP-binding protein.	Peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.849
VS_0074	VS_II0932	VS_0074	VS_II0932	Hypothetical ABC transporter ATP-binding protein.	ABC transporter: two domain ATP-binding protein; Belongs to the ABC transporter superfamily.	0.482
VS_0074	VS_II1377	VS_0074	VS_II1377	Hypothetical ABC transporter ATP-binding protein.	ABC transporter: ATP-binding protein; Belongs to the ABC transporter superfamily.	0.471
VS_0074	VS_II1528	VS_0074	VS_II1528	Hypothetical ABC transporter ATP-binding protein.	ABC systems: ATP binding protein.	0.775
VS_0074	VS_II1529	VS_0074	VS_II1529	Hypothetical ABC transporter ATP-binding protein.	ABC systems: ATP-binding protein; Belongs to the ABC transporter superfamily.	0.579
VS_0878	VS_II1089	VS_0878	VS_II1089	ABC transporter: ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter: ATP binding protein.	0.410
VS_0878	modC	VS_0878	VS_II0725	ABC transporter: ATP-binding protein; Belongs to the ABC transporter superfamily.	Molybdenum import ATP-binding protein modC; Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Molybdate importer (TC 3.A.1.8) family.	0.404
VS_0993	VS_0074	VS_0993	VS_0074	Oligopeptide transport ATP-binding protein oppD; Belongs to the ABC transporter superfamily.	Hypothetical ABC transporter ATP-binding protein.	0.770
VS_0993	VS_0994	VS_0993	VS_0994	Oligopeptide transport ATP-binding protein oppD; Belongs to the ABC transporter superfamily.	Oligopeptide transport ATP-binding protein oppF; Belongs to the ABC transporter superfamily.	0.939
VS_0993	VS_2509	VS_0993	VS_2509	Oligopeptide transport ATP-binding protein oppD; Belongs to the ABC transporter superfamily.	Oligopeptide transport ATP-binding protein oppD; Belongs to the ABC transporter superfamily.	0.582
VS_0993	VS_2510	VS_0993	VS_2510	Oligopeptide transport ATP-binding protein oppD; Belongs to the ABC transporter superfamily.	Peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.671
VS_0993	VS_II0188	VS_0993	VS_II0188	Oligopeptide transport ATP-binding protein oppD; Belongs to the ABC transporter superfamily.	ABC transporter: two domain ATP-binding protein; Function of strongly homologous gene; transporter.	0.614
VS_0993	VS_II0932	VS_0993	VS_II0932	Oligopeptide transport ATP-binding protein oppD; Belongs to the ABC transporter superfamily.	ABC transporter: two domain ATP-binding protein; Belongs to the ABC transporter superfamily.	0.648