(14 nodes) Cytochrome c-like domain superfamily network (Vibrio tasmaniensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VS_1922	Hypothetical protein. (483 aa)
	VS_II0365	Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). (419 aa)
	VS_II0656	Putative methylamine utilization protein mauG precursor. (357 aa)
	VS_II0657	Probable cytochrome-c peroxidase. (388 aa)
	VS_II0893	Hypothetical protein. (131 aa)
	VS_II0896	Putative cytochrome c, class I. (453 aa)
	VS_II0895	Cbb3-type cytochrome oxidase, cytochrome c subunit. (204 aa)
	VS_0067	Cytochrome c5. (166 aa)
	VS_0112	Cytochrome c4 precursor. (205 aa)
	VS_0433	Ubiquinol-cytochrome c reductase,cytochrome c1. (245 aa)
	VS_1460	Cytochrome c oxidase, subunit CcoO. (206 aa)
	VS_1462	Cytochrome c oxidase, subunit CcoP; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. (324 aa)
	VS_1574	Hypothetical protein. (121 aa)
	VS_2334	Cytochrome c553. (107 aa)

Your Current Organism:

Vibrio tasmaniensis

NCBI taxonomy Id: 575788
Other names: V. tasmaniensis LGP32, Vibrio lentus MEL32, Vibrio splendidus LGP32, Vibrio tasmaniensis LGP32

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
VS_0067	VS_0112	Cytochrome c5.	Cytochrome c4 precursor.	0.897
VS_0067	VS_0433	Cytochrome c5.	Ubiquinol-cytochrome c reductase,cytochrome c1.	0.779
VS_0067	VS_1460	Cytochrome c5.	Cytochrome c oxidase, subunit CcoO.	0.680
VS_0067	VS_1462	Cytochrome c5.	Cytochrome c oxidase, subunit CcoP; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.	0.840
VS_0067	VS_1574	Cytochrome c5.	Hypothetical protein.	0.489
VS_0067	VS_2334	Cytochrome c5.	Cytochrome c553.	0.788
VS_0067	VS_II0365	Cytochrome c5.	Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	0.915
VS_0067	VS_II0893	Cytochrome c5.	Hypothetical protein.	0.789
VS_0067	VS_II0895	Cytochrome c5.	Cbb3-type cytochrome oxidase, cytochrome c subunit.	0.635
VS_0067	VS_II0896	Cytochrome c5.	Putative cytochrome c, class I.	0.489
VS_0112	VS_0067	Cytochrome c4 precursor.	Cytochrome c5.	0.897
VS_0112	VS_0433	Cytochrome c4 precursor.	Ubiquinol-cytochrome c reductase,cytochrome c1.	0.905
VS_0112	VS_1460	Cytochrome c4 precursor.	Cytochrome c oxidase, subunit CcoO.	0.855
VS_0112	VS_1462	Cytochrome c4 precursor.	Cytochrome c oxidase, subunit CcoP; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.	0.601
VS_0112	VS_II0365	Cytochrome c4 precursor.	Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	0.918
VS_0112	VS_II0895	Cytochrome c4 precursor.	Cbb3-type cytochrome oxidase, cytochrome c subunit.	0.828
VS_0112	VS_II0896	Cytochrome c4 precursor.	Putative cytochrome c, class I.	0.551
VS_0433	VS_0067	Ubiquinol-cytochrome c reductase,cytochrome c1.	Cytochrome c5.	0.779
VS_0433	VS_0112	Ubiquinol-cytochrome c reductase,cytochrome c1.	Cytochrome c4 precursor.	0.905
VS_0433	VS_1460	Ubiquinol-cytochrome c reductase,cytochrome c1.	Cytochrome c oxidase, subunit CcoO.	0.866