(36 nodes) Ribosome network (Entamoeba histolytica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	79.t00027	40S ribosomal protein S14, putative; Belongs to the universal ribosomal protein uS11 family. (146 aa)
	66.t00032	60S ribosomal protein L10a-2, putative. (214 aa)
	315.t00001	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (316 aa)
	184.t00013	60S ribosomal protein L35a, putative. (108 aa)
	257.t00004	60S ribosomal protein L44, putative; Belongs to the eukaryotic ribosomal protein eL42 family. (98 aa)
	446.t00004	60S ribosomal protein L24, putative. (163 aa)
	260.t00009	40S ribosomal protein S3, putative. (244 aa)
	9.t00009	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (64 aa)
	64.t00024	40S ribosomal protein S5, putative; Belongs to the universal ribosomal protein uS7 family. (206 aa)
	121.t00024	60S ribosomal protein L39, putative. (51 aa)
	425.t00009	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (256 aa)
	215.t00013	60S ribosomal protein L5, putative. (286 aa)
	25.t00036	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (64 aa)
	28.t00013	Ribosomal protein L23A, putative; Belongs to the universal ribosomal protein uL23 family. (121 aa)
	172.t00011	60S ribosomal protein L23, putative; Belongs to the universal ribosomal protein uL14 family. (140 aa)
	92.t00039	40S ribosomal protein S10, putative. (127 aa)
	117.t00031	Ribosomal protein S29, putative. (56 aa)
	762.t00001	Uncharacterized protein. (137 aa)
	159.t00023	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (86 aa)
	129.t00016	60S ribosomal protein L2/L8, putative. (257 aa)
	14.t00031	Uncharacterized protein. (308 aa)
	404.t00006	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (173 aa)
	94.t00019	40S ribosomal protein S18, putative; Belongs to the universal ribosomal protein uS13 family. (155 aa)
	336.t00006	60S ribosomal protein L36, putative. (104 aa)
	108.t00003	40S ribosomal protein S28, putative. (69 aa)
	446.t00001	60S ribosomal protein L12, putative; Belongs to the universal ribosomal protein uL11 family. (167 aa)
	8.t00016	40S ribosomal protein S20, putative. (118 aa)
	472.t00007	40S ribosomal protein S23, putative; Belongs to the universal ribosomal protein uS12 family. (141 aa)
	361.t00008	40S ribosomal protein S2, putative; Belongs to the universal ribosomal protein uS5 family. (255 aa)
	472.t00005	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (205 aa)
	158.t00013	40S ribosomal protein S27a, putative. (139 aa)
	333.t00009	60S ribosomal protein L30, putative. (109 aa)
	302.t00008	40S ribosomal protein S11, putative; Belongs to the universal ribosomal protein uS17 family. (156 aa)
	319.t00003	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (137 aa)
	350.t00006	40S ribosomal protein S19, putative. (155 aa)
	54.t00008	60S ribosomal protein L35, putative. (112 aa)

Your Current Organism:

Entamoeba histolytica

NCBI taxonomy Id: 5759
Other names: E. histolytica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
108.t00003	117.t00031	C4LZQ8	C4LW10	40S ribosomal protein S28, putative.	Ribosomal protein S29, putative.	0.998
108.t00003	121.t00024	C4LZQ8	C4LTA2	40S ribosomal protein S28, putative.	60S ribosomal protein L39, putative.	0.991
108.t00003	129.t00016	C4LZQ8	C4LWZ3	40S ribosomal protein S28, putative.	60S ribosomal protein L2/L8, putative.	0.990
108.t00003	14.t00031	C4LZQ8	C4LX78	40S ribosomal protein S28, putative.	Uncharacterized protein.	0.984
108.t00003	158.t00013	C4LZQ8	C4M8F6	40S ribosomal protein S28, putative.	40S ribosomal protein S27a, putative.	0.995
108.t00003	159.t00023	C4LZQ8	C4LWW3	40S ribosomal protein S28, putative.	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.	0.998
108.t00003	172.t00011	C4LZQ8	C4LVB0	40S ribosomal protein S28, putative.	60S ribosomal protein L23, putative; Belongs to the universal ribosomal protein uL14 family.	0.987
108.t00003	184.t00013	C4LZQ8	B1N4V3	40S ribosomal protein S28, putative.	60S ribosomal protein L35a, putative.	0.991
108.t00003	215.t00013	C4LZQ8	C4LU56	40S ribosomal protein S28, putative.	60S ribosomal protein L5, putative.	0.993
108.t00003	25.t00036	C4LZQ8	C4LUN3	40S ribosomal protein S28, putative.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.988
108.t00003	257.t00004	C4LZQ8	C4LS99	40S ribosomal protein S28, putative.	60S ribosomal protein L44, putative; Belongs to the eukaryotic ribosomal protein eL42 family.	0.994
108.t00003	260.t00009	C4LZQ8	C4LT02	40S ribosomal protein S28, putative.	40S ribosomal protein S3, putative.	0.998
108.t00003	28.t00013	C4LZQ8	C4LV64	40S ribosomal protein S28, putative.	Ribosomal protein L23A, putative; Belongs to the universal ribosomal protein uL23 family.	0.990
108.t00003	302.t00008	C4LZQ8	C4M979	40S ribosomal protein S28, putative.	40S ribosomal protein S11, putative; Belongs to the universal ribosomal protein uS17 family.	0.991
108.t00003	315.t00001	C4LZQ8	B1N2Z3	40S ribosomal protein S28, putative.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.988
108.t00003	319.t00003	C4LZQ8	C4M9F4	40S ribosomal protein S28, putative.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.991
108.t00003	333.t00009	C4LZQ8	C4M919	40S ribosomal protein S28, putative.	60S ribosomal protein L30, putative.	0.993
108.t00003	336.t00006	C4LZQ8	C4LZH1	40S ribosomal protein S28, putative.	60S ribosomal protein L36, putative.	0.989
108.t00003	350.t00006	C4LZQ8	C4MA13	40S ribosomal protein S28, putative.	40S ribosomal protein S19, putative.	0.992
108.t00003	361.t00008	C4LZQ8	C4M7U0	40S ribosomal protein S28, putative.	40S ribosomal protein S2, putative; Belongs to the universal ribosomal protein uS5 family.	0.997