(37 nodes) rRNA binding network (Entamoeba histolytica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EHI_057850	40S ribosomal protein S4, putative. (197 aa)
	370.t00006	40S ribosomal protein S4, putative. (326 aa)
	94.t00019	40S ribosomal protein S18, putative; Belongs to the universal ribosomal protein uS13 family. (155 aa)
	42.t00043	60S ribosomal protein L11, putative; Belongs to the universal ribosomal protein uL5 family. (174 aa)
	262.t00008	Ribosome biogenesis protein, putative. (291 aa)
	164.t00003	60S ribosomal protein L11, putative; Belongs to the universal ribosomal protein uL5 family. (174 aa)
	10.t00012	POP4 domain-containing protein. (237 aa)
	70.t00019	U3 small nucleolar ribonucleoprotein protein IMP4, putative. (273 aa)
	242.t00011	60S ribosomal protein L37-A, putative. (77 aa)
	446.t00001	60S ribosomal protein L12, putative; Belongs to the universal ribosomal protein uL11 family. (167 aa)
	EHI_086120	40S ribosomal protein S18, putative; Belongs to the universal ribosomal protein uS13 family. (143 aa)
	115.t00005	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (258 aa)
	312.t00001	60S ribosomal protein L9, putative. (197 aa)
	EHI_112880	40S ribosomal protein S13, putative; Belongs to the universal ribosomal protein uS15 family. (148 aa)
	289.t00009	Ribosome biogenesis protein, putative. (295 aa)
	11.t00056	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (185 aa)
	37.t00027	RNA recognition motif domain containing protein. (685 aa)
	87.t00003	Uncharacterized protein. (268 aa)
	117.t00014	60S ribosomal protein L9, putative. (197 aa)
	221.t00002	40S ribosomal protein S5, putative; Belongs to the universal ribosomal protein uS7 family. (205 aa)
	221.t00012	Ribosome biogenesis protein, putative. (311 aa)
	172.t00011	60S ribosomal protein L23, putative; Belongs to the universal ribosomal protein uL14 family. (140 aa)
	28.t00013	Ribosomal protein L23A, putative; Belongs to the universal ribosomal protein uL23 family. (121 aa)
	15.t00021	40S ribosomal protein S9, putative. (185 aa)
	215.t00013	60S ribosomal protein L5, putative. (286 aa)
	16.t00022	Brix domain containing protein. (353 aa)
	3.t00130	Ribosome biogenesis protein NEP1, putative. (227 aa)
	64.t00024	40S ribosomal protein S5, putative; Belongs to the universal ribosomal protein uS7 family. (206 aa)
	EHI_025600	60S ribosomal protein L37, putative. (49 aa)
	EHI_059540	Brix domain-containing protein 1, putative. (153 aa)
	178.t00005	U3 small nucleolar ribonucleoprotein subunit, putative. (186 aa)
	EHI_195100	Brix domain-containing protein. (297 aa)
	EHI_118170	40S ribosomal protein S4, putative. (318 aa)
	315.t00001	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (316 aa)
	79.t00027	40S ribosomal protein S14, putative; Belongs to the universal ribosomal protein uS11 family. (146 aa)
	17.t00001	40S ribosomal protein S13, putative; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	104.t00018	Uncharacterized protein. (613 aa)

Your Current Organism:

Entamoeba histolytica

NCBI taxonomy Id: 5759
Other names: E. histolytica

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
10.t00012	178.t00005	C4M048	B1N507	POP4 domain-containing protein.	U3 small nucleolar ribonucleoprotein subunit, putative.	0.510
10.t00012	87.t00003	C4M048	C4LWW1	POP4 domain-containing protein.	Uncharacterized protein.	0.461
104.t00018	11.t00056	C4LY41	O15612	Uncharacterized protein.	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	0.761
104.t00018	115.t00005	C4LY41	C4M883	Uncharacterized protein.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.464
104.t00018	15.t00021	C4LY41	C4LUW3	Uncharacterized protein.	40S ribosomal protein S9, putative.	0.761
104.t00018	16.t00022	C4LY41	C4LTL2	Uncharacterized protein.	Brix domain containing protein.	0.628
104.t00018	178.t00005	C4LY41	B1N507	Uncharacterized protein.	U3 small nucleolar ribonucleoprotein subunit, putative.	0.949
104.t00018	262.t00008	C4LY41	C4LZN4	Uncharacterized protein.	Ribosome biogenesis protein, putative.	0.541
104.t00018	289.t00009	C4LY41	C4MAW7	Uncharacterized protein.	Ribosome biogenesis protein, putative.	0.585
104.t00018	3.t00130	C4LY41	C4LT83	Uncharacterized protein.	Ribosome biogenesis protein NEP1, putative.	0.997
104.t00018	315.t00001	C4LY41	B1N2Z3	Uncharacterized protein.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.420
104.t00018	37.t00027	C4LY41	C4LXQ1	Uncharacterized protein.	RNA recognition motif domain containing protein.	0.670
104.t00018	70.t00019	C4LY41	C4M085	Uncharacterized protein.	U3 small nucleolar ribonucleoprotein protein IMP4, putative.	0.980
104.t00018	79.t00027	C4LY41	B1N2I3	Uncharacterized protein.	40S ribosomal protein S14, putative; Belongs to the universal ribosomal protein uS11 family.	0.990
104.t00018	87.t00003	C4LY41	C4LWW1	Uncharacterized protein.	Uncharacterized protein.	0.928
104.t00018	EHI_059540	C4LY41	B1N5R4	Uncharacterized protein.	Brix domain-containing protein 1, putative.	0.585
104.t00018	EHI_195100	C4LY41	B1N3M3	Uncharacterized protein.	Brix domain-containing protein.	0.980
11.t00056	104.t00018	O15612	C4LY41	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	Uncharacterized protein.	0.761
11.t00056	115.t00005	O15612	C4M883	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.564
11.t00056	117.t00014	O15612	C4LVZ9	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	60S ribosomal protein L9, putative.	0.962