(8 nodes) Preribosome, small subunit precursor network (Entamoeba histolytica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	183.t00019	RIO1 family protein. (474 aa)
	302.t00001	Uncharacterized protein. (298 aa)
	186.t00021	RIO1 family protein. (345 aa)
	108.t00021	Nuclear complex protein 4, putative. (333 aa)
	114.t00007	Uncharacterized protein. (675 aa)
	376.t00009	Bystin, putative. (431 aa)
	88.t00030	Uncharacterized protein; Belongs to the NOB1 family. (518 aa)
	EHI_174260	Uncharacterized protein. (226 aa)

Your Current Organism:

Entamoeba histolytica

NCBI taxonomy Id: 5759
Other names: E. histolytica

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
108.t00021	114.t00007	C4M5T1	C4M0L5	Nuclear complex protein 4, putative.	Uncharacterized protein.	0.920
108.t00021	183.t00019	C4M5T1	C4LTW9	Nuclear complex protein 4, putative.	RIO1 family protein.	0.768
108.t00021	186.t00021	C4M5T1	C4M7J5	Nuclear complex protein 4, putative.	RIO1 family protein.	0.908
108.t00021	302.t00001	C4M5T1	C4M977	Nuclear complex protein 4, putative.	Uncharacterized protein.	0.913
108.t00021	376.t00009	C4M5T1	C4M090	Nuclear complex protein 4, putative.	Bystin, putative.	0.995
108.t00021	88.t00030	C4M5T1	C4LXV1	Nuclear complex protein 4, putative.	Uncharacterized protein; Belongs to the NOB1 family.	0.968
108.t00021	EHI_174260	C4M5T1	B1N3G3	Nuclear complex protein 4, putative.	Uncharacterized protein.	0.995
114.t00007	108.t00021	C4M0L5	C4M5T1	Uncharacterized protein.	Nuclear complex protein 4, putative.	0.920
114.t00007	183.t00019	C4M0L5	C4LTW9	Uncharacterized protein.	RIO1 family protein.	0.987
114.t00007	186.t00021	C4M0L5	C4M7J5	Uncharacterized protein.	RIO1 family protein.	0.999
114.t00007	302.t00001	C4M0L5	C4M977	Uncharacterized protein.	Uncharacterized protein.	0.846
114.t00007	376.t00009	C4M0L5	C4M090	Uncharacterized protein.	Bystin, putative.	0.998
114.t00007	88.t00030	C4M0L5	C4LXV1	Uncharacterized protein.	Uncharacterized protein; Belongs to the NOB1 family.	0.999
114.t00007	EHI_174260	C4M0L5	B1N3G3	Uncharacterized protein.	Uncharacterized protein.	0.998
183.t00019	108.t00021	C4LTW9	C4M5T1	RIO1 family protein.	Nuclear complex protein 4, putative.	0.768
183.t00019	114.t00007	C4LTW9	C4M0L5	RIO1 family protein.	Uncharacterized protein.	0.987
183.t00019	186.t00021	C4LTW9	C4M7J5	RIO1 family protein.	RIO1 family protein.	0.981
183.t00019	302.t00001	C4LTW9	C4M977	RIO1 family protein.	Uncharacterized protein.	0.687
183.t00019	376.t00009	C4LTW9	C4M090	RIO1 family protein.	Bystin, putative.	0.944
183.t00019	88.t00030	C4LTW9	C4LXV1	RIO1 family protein.	Uncharacterized protein; Belongs to the NOB1 family.	0.999