(3 nodes) snRNA pseudouridine synthesis network (Entamoeba histolytica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	250.t00013	H/ACA ribonucleoprotein complex subunit 2-like protein, putative. (139 aa)
	254.t00012	Centromere/microtubule binding protein cbf5, putative. (484 aa)
	41.t00030	Ribosome biogenesis protein Nop10, putative. (59 aa)

Your Current Organism:

Entamoeba histolytica

NCBI taxonomy Id: 5759
Other names: E. histolytica

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
250.t00013	254.t00012	C4M5J9	C4M8E1	H/ACA ribonucleoprotein complex subunit 2-like protein, putative.	Centromere/microtubule binding protein cbf5, putative.	0.999
250.t00013	41.t00030	C4M5J9	C4M9Y2	H/ACA ribonucleoprotein complex subunit 2-like protein, putative.	Ribosome biogenesis protein Nop10, putative.	0.999
254.t00012	250.t00013	C4M8E1	C4M5J9	Centromere/microtubule binding protein cbf5, putative.	H/ACA ribonucleoprotein complex subunit 2-like protein, putative.	0.999
254.t00012	41.t00030	C4M8E1	C4M9Y2	Centromere/microtubule binding protein cbf5, putative.	Ribosome biogenesis protein Nop10, putative.	0.999
41.t00030	250.t00013	C4M9Y2	C4M5J9	Ribosome biogenesis protein Nop10, putative.	H/ACA ribonucleoprotein complex subunit 2-like protein, putative.	0.999
41.t00030	254.t00012	C4M9Y2	C4M8E1	Ribosome biogenesis protein Nop10, putative.	Centromere/microtubule binding protein cbf5, putative.	0.999