(16 nodes) Ubiquitin-like protein ligase binding network (Entamoeba histolytica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EHI_078420	Uncharacterized protein; Belongs to the cullin family. (521 aa)
	2.t00115	Uncharacterized protein. (185 aa)
	1.t00141	Cullin, putative; Belongs to the cullin family. (706 aa)
	425.t00005	SGS domain protein. (156 aa)
	186.t00020	60S ribosomal protein L40, putative. (56 aa)
	300.t00010	Ubiquitin-like, putative. (77 aa)
	32.t00019	Cullin, putative; Belongs to the cullin family. (728 aa)
	14.t00031	Uncharacterized protein. (308 aa)
	18.t00001	Cullin, putative; Belongs to the cullin family. (741 aa)
	19.t00039	Ubiquitin-like protein. (114 aa)
	80.t00031	Uncharacterized protein; Belongs to the cullin family. (743 aa)
	100.t00027	Cullin, putative; Belongs to the cullin family. (721 aa)
	30.t00038	Uncharacterized protein. (461 aa)
	158.t00013	40S ribosomal protein S27a, putative. (139 aa)
	130.t00003	Cullin, putative; Belongs to the cullin family. (675 aa)
	224.t00011	Cullin, putative; Belongs to the cullin family. (672 aa)

Your Current Organism:

Entamoeba histolytica

NCBI taxonomy Id: 5759
Other names: E. histolytica

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
1.t00141	100.t00027	C4LSY6	C4M4E3	Cullin, putative; Belongs to the cullin family.	Cullin, putative; Belongs to the cullin family.	0.715
1.t00141	130.t00003	C4LSY6	C4M9N4	Cullin, putative; Belongs to the cullin family.	Cullin, putative; Belongs to the cullin family.	0.690
1.t00141	14.t00031	C4LSY6	C4LX78	Cullin, putative; Belongs to the cullin family.	Uncharacterized protein.	0.769
1.t00141	158.t00013	C4LSY6	C4M8F6	Cullin, putative; Belongs to the cullin family.	40S ribosomal protein S27a, putative.	0.760
1.t00141	18.t00001	C4LSY6	C4LZ01	Cullin, putative; Belongs to the cullin family.	Cullin, putative; Belongs to the cullin family.	0.791
1.t00141	186.t00020	C4LSY6	C4LV09	Cullin, putative; Belongs to the cullin family.	60S ribosomal protein L40, putative.	0.573
1.t00141	19.t00039	C4LSY6	C4M1C8	Cullin, putative; Belongs to the cullin family.	Ubiquitin-like protein.	0.812
1.t00141	2.t00115	C4LSY6	C4LSK3	Cullin, putative; Belongs to the cullin family.	Uncharacterized protein.	0.812
1.t00141	224.t00011	C4LSY6	C4MAF7	Cullin, putative; Belongs to the cullin family.	Cullin, putative; Belongs to the cullin family.	0.432
1.t00141	300.t00010	C4LSY6	C4LVJ5	Cullin, putative; Belongs to the cullin family.	Ubiquitin-like, putative.	0.955
1.t00141	32.t00019	C4LSY6	C4LWL8	Cullin, putative; Belongs to the cullin family.	Cullin, putative; Belongs to the cullin family.	0.426
1.t00141	EHI_078420	C4LSY6	B1N5E9	Cullin, putative; Belongs to the cullin family.	Uncharacterized protein; Belongs to the cullin family.	0.690
100.t00027	1.t00141	C4M4E3	C4LSY6	Cullin, putative; Belongs to the cullin family.	Cullin, putative; Belongs to the cullin family.	0.715
100.t00027	130.t00003	C4M4E3	C4M9N4	Cullin, putative; Belongs to the cullin family.	Cullin, putative; Belongs to the cullin family.	0.569
100.t00027	14.t00031	C4M4E3	C4LX78	Cullin, putative; Belongs to the cullin family.	Uncharacterized protein.	0.803
100.t00027	158.t00013	C4M4E3	C4M8F6	Cullin, putative; Belongs to the cullin family.	40S ribosomal protein S27a, putative.	0.683
100.t00027	18.t00001	C4M4E3	C4LZ01	Cullin, putative; Belongs to the cullin family.	Cullin, putative; Belongs to the cullin family.	0.696
100.t00027	186.t00020	C4M4E3	C4LV09	Cullin, putative; Belongs to the cullin family.	60S ribosomal protein L40, putative.	0.581
100.t00027	30.t00038	C4M4E3	C4M5W5	Cullin, putative; Belongs to the cullin family.	Uncharacterized protein.	0.513
100.t00027	300.t00010	C4M4E3	C4LVJ5	Cullin, putative; Belongs to the cullin family.	Ubiquitin-like, putative.	0.921