STRINGSTRING
trf1 trf1 EHI_153810 EHI_153810 EHI_152700 EHI_152700 EHI_103320 EHI_103320 EHI_141410 EHI_141410 EHI_124360 EHI_124360 EHI_021380 EHI_021380 LSM8 LSM8 EHI_027560 EHI_027560 EHI_076840 EHI_076840 EHI_077220 EHI_077220 EHI_195100 EHI_195100 EHI_142760 EHI_142760 31.t00025 31.t00025 EHI_080750 EHI_080750 EHI_135440 EHI_135440 EHI_123830 EHI_123830 EHI_129630 EHI_129630 EHI_085470 EHI_085470 EHI_094780 EHI_094780 178.t00005 178.t00005 EHI_106700 EHI_106700 EHI_048860 EHI_048860 13.t00023 13.t00023 13.t00017 13.t00017 2.t00032 2.t00032 2.t00040 2.t00040 2.t00064 2.t00064 2.t00084 2.t00084 24.t00027 24.t00027 1.t00124 1.t00124 1.t00120 1.t00120 1.t00062 1.t00062 64.t00037 64.t00037 3.t00008 3.t00008 3.t00009 3.t00009 3.t00076 3.t00076 3.t00075 3.t00075 3.t00072 3.t00072 3.t00067 3.t00067 3.t00063 3.t00063 72.t00013 72.t00013 31.t00014 31.t00014 10.t00056 10.t00056 10.t00027 10.t00027 10.t00022 10.t00022 5.t00021 5.t00021 8.t00062 8.t00062 8.t00061 8.t00061 8.t00057 8.t00057 61.t00026 61.t00026 61.t00040 61.t00040 LSM4 LSM4 4.t00027 4.t00027 81.t00015 81.t00015 15.t00067 15.t00067 15.t00009 15.t00009 50.t00031 50.t00031 26.t00017 26.t00017 343.t00005 343.t00005 35.t00002 35.t00002 9.t00022 9.t00022 300.t00001 300.t00001 300.t00004 300.t00004 85.t00004 85.t00004 12.t00018 12.t00018 12.t00016 12.t00016 11.t00003 11.t00003 465.t00006 465.t00006 117.t00040 117.t00040 117.t00023 117.t00023 117.t00032 117.t00032 117.t00038 117.t00038 48.t00017 48.t00017 200.t00008 200.t00008 18.t00015 18.t00015 207.t00012 207.t00012 6.t00018 6.t00018 32.t00015 32.t00015 194.t00015 194.t00015 39.t00016 39.t00016 230.t00015 230.t00015 39.t00053 39.t00053 129.t00030 129.t00030 159.t00020 159.t00020 88.t00008 88.t00008 155.t00005 155.t00005 14.t00016 14.t00016 14.t00019 14.t00019 14.t00046 14.t00046 14.t00054 14.t00054 77.t00020 77.t00020 77.t00019 77.t00019 27.t00035 27.t00035 9.t00070 9.t00070 406.t00005 406.t00005 169.t00023 169.t00023 17.t00040 17.t00040 402.t00001 402.t00001 55.t00023 55.t00023 3.t00048 3.t00048 taf1 taf1 3.t00022 3.t00022 261.t00007 261.t00007 62.t00030 62.t00030 62.t00017 62.t00017 43.t00022 43.t00022 18.t00059 18.t00059 18.t00052 18.t00052 18.t00025 18.t00025 47.t00002 47.t00002 47.t00024 47.t00024 47.t00026 47.t00026 415.t00007 415.t00007 106.t00006 106.t00006 91.t00006 91.t00006 91.t00007 91.t00007 91.t00009 91.t00009 64.t00021 64.t00021 86.t00015 86.t00015 7.t00016 7.t00016 7.t00018 7.t00018 46.t00052 46.t00052 83.t00014 83.t00014 10.t00012 10.t00012 201.t00018 201.t00018 201.t00013 201.t00013 203.t00019 203.t00019 203.t00012 203.t00012 70.t00019 70.t00019 178.t00011 178.t00011 178.t00012 178.t00012 53.t00034 53.t00034 180.t00010 180.t00010 368.t00004 368.t00004 4.t00129 4.t00129 153.t00017 153.t00017 153.t00011 153.t00011 153.t00021 153.t00021 153.t00005 153.t00005 224.t00013 224.t00013 68.t00035 68.t00035 75.t00036 75.t00036 75.t00014 75.t00014 19.t00055 19.t00055 19.t00042 19.t00042 77.t00007 77.t00007 7.t00062 7.t00062 69.t00024 69.t00024 1.t00023 1.t00023 34.t00014 34.t00014 22.t00011 22.t00011 177.t00022 177.t00022 33.t00006 33.t00006 33.t00007 33.t00007 33.t00032 33.t00032 198.t00006 198.t00006 144.t00004 144.t00004 144.t00006 144.t00006 144.t00012 144.t00012 133.t00016 133.t00016 102.t00005 102.t00005 40.t00030 40.t00030 40.t00021 40.t00021 40.t00010 40.t00010 94.t00035 94.t00035 448.t00002 448.t00002 5.t00083 5.t00083 208.t00013 208.t00013 41.t00010 41.t00010 310.t00009 310.t00009 128.t00016 128.t00016 60.t00026 60.t00026 256.t00007 256.t00007 74.t00043 74.t00043 74.t00033 74.t00033 409.t00001 409.t00001 206.t00006 206.t00006 72.t00035 72.t00035 326.t00002 326.t00002 108.t00016 108.t00016 100.t00007 100.t00007 100.t00020 100.t00020 243.t00007 243.t00007 154.t00023 154.t00023 154.t00014 154.t00014 191.t00020 191.t00020 82.t00003 82.t00003 139.t00016 139.t00016 134.t00021 134.t00021 110.t00019 110.t00019 110.t00023 110.t00023 137.t00010 137.t00010 162.t00003 162.t00003 250.t00013 250.t00013 90.t00020 90.t00020 59.t00008 59.t00008 59.t00015 59.t00015 59.t00037 59.t00037 146.t00025 146.t00025 108.t00021 108.t00021 113.t00017 113.t00017 113.t00005 113.t00005 73.t00023 73.t00023 135.t00015 135.t00015 145.t00010 145.t00010 145.t00002 145.t00002 217.t00016 217.t00016 51.t00022 51.t00022 51.t00023 51.t00023 89.t00010 89.t00010 89.t00016 89.t00016 51.t00007 51.t00007 51.t00011 51.t00011 136.t00023 136.t00023 51.t00031 51.t00031 336.t00001 336.t00001 167.t00017 167.t00017 171.t00022 171.t00022 193.t00008 193.t00008 452.t00002 452.t00002 56.t00027 56.t00027 39.t00057 39.t00057 226.t00010 226.t00010 45.t00005 45.t00005 45.t00008 45.t00008 484.t00001 484.t00001 186.t00016 186.t00016 30.t00018 30.t00018 8.t00008 8.t00008 211.t00005 211.t00005 170.t00021 170.t00021 170.t00025 170.t00025 170.t00019 170.t00019 286.t00007 286.t00007 254.t00012 254.t00012 197.t00012 197.t00012 290.t00003 290.t00003 59.t00026 59.t00026 59.t00027 59.t00027 297.t00005 297.t00005 180.t00014 180.t00014 333.t00005 333.t00005 392.t00003 392.t00003 54.t00046 54.t00046 370.t00004 370.t00004 222.t00013 222.t00013 222.t00004 222.t00004 4.t00062 4.t00062 9.t00076 9.t00076 90.t00002 90.t00002 113.t00021 113.t00021 161.t00010 161.t00010 344.t00001 344.t00001 165.t00012 165.t00012 292.t00013 292.t00013 188.t00013 188.t00013 188.t00019 188.t00019 41.t00030 41.t00030 136.t00018 136.t00018 281.t00001 281.t00001 404.t00004 404.t00004 121.t00002 121.t00002 902.t00001 902.t00001 373.t00007 373.t00007 346.t00005 346.t00005 72.t00027 72.t00027 13.t00007 13.t00007 14.t00057 14.t00057 562.t00001 562.t00001 279.t00017 279.t00017 436.t00002 436.t00002 217.t00008 217.t00008 TBP TBP 264.t00015 264.t00015 60.t00011 60.t00011 48.t00008 48.t00008 RPB1 RPB1 CFIm25 CFIm25 fus6 fus6
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
trf1TATA-box-binding protein-like protein 1; TATA box-binding transcription factor. Members of the TBP family are differentially required to regulate transcription and development during early embryogenesis. (216 aa)
EHI_153810RNA recognition motif domain containing protein. (372 aa)
EHI_152700Uncharacterized protein; Belongs to the SKP1 family. (98 aa)
EHI_103320Uncharacterized protein. (210 aa)
EHI_141410Uncharacterized protein. (395 aa)
EHI_124360Uncharacterized protein. (212 aa)
EHI_021380U5 small nuclear ribonucleoprotein subunit, putative. (954 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (94 aa)
EHI_027560Pre-mRNA-splicing factor PRP46, putative. (276 aa)
EHI_076840Uncharacterized protein. (83 aa)
EHI_077220Pre-mRNA cleavage factor I 25 kDa subunit, putative. (129 aa)
EHI_195100Brix domain-containing protein. (297 aa)
EHI_142760Protein kinase domain containing protein. (297 aa)
31.t00025Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (107 aa)
EHI_080750Uncharacterized protein. (213 aa)
EHI_135440Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Belongs to the eukaryotic/archaeal RNase P protein component 2 family. (120 aa)
EHI_123830DNA mismatch repair protein Msh2, putative. (630 aa)
EHI_129630DNA primase small subunit, putative. (189 aa)
EHI_085470Splicing factor3B subunit 1, putative. (460 aa)
EHI_094780Pescadillo homolog, putative. (163 aa)
178.t00005U3 small nucleolar ribonucleoprotein subunit, putative. (186 aa)
EHI_106700Protein kinase domain containing protein. (236 aa)
EHI_048860U3 small nucleolar ribonucleo protein protein MPP10, putative. (215 aa)
13.t00023Pre-mRNA-splicing factor PRP46, putative. (311 aa)
13.t00017U1 small nuclear ribonucleoprotein subunit, putative. (509 aa)
2.t00032U6 snRNA-associated Sm-like protein LSm3, putative. (78 aa)
2.t00040WD domain containing protein. (881 aa)
2.t00064DNA polymerase. (1132 aa)
2.t00084Uncharacterized protein. (579 aa)
24.t00027RNA polymerase III subunit, putative. (499 aa)
1.t00124DNA repair endonuclease, putative. (882 aa)
1.t00120Transcription initiation protein SPT4, putative. (128 aa)
1.t00062Helicase, putative. (811 aa)
64.t00037DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (122 aa)
3.t00008Nuclear transport factor 2-like export factor 2, putative. (132 aa)
3.t00009Helicase, putative. (955 aa)
3.t00076Uncharacterized protein. (428 aa)
3.t00075SLBP_RNA_bind domain-containing protein. (196 aa)
3.t00072U5 snRNP-specific 200kd protein, putative. (1799 aa)
3.t00067Uncharacterized protein. (255 aa)
3.t00063DIM1 family protein, putative. (142 aa)
72.t00013Uncharacterized protein. (336 aa)
31.t00014Splicing factor 3B subunit 4, putative. (199 aa)
10.t00056Uncharacterized protein. (318 aa)
10.t00027U1snRNP-specific protein, putative. (232 aa)
10.t00022DNA-directed RNA polymerase III subunit, putative. (236 aa)
5.t00021WD domain containing protein. (337 aa)
8.t00062WD domain containing protein. (831 aa)
8.t00061Cell cycle control protein cwf5, putative. (184 aa)
8.t00057Uncharacterized protein. (220 aa)
61.t00026COP9 signalosome subunit, putative. (310 aa)
61.t00040U6 snRNA-associated Sm-like protein LSm2, putative. (62 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (81 aa)
4.t00027Cell division control protein 45 CDC45, putative. (543 aa)
81.t00015DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1170 aa)
15.t00067Histone RNA hairpin-binding protein, putative. (216 aa)
15.t00009Uncharacterized protein. (612 aa)
50.t00031Uncharacterized protein. (1231 aa)
26.t00017tRNA intron endonuclease, putative. (163 aa)
343.t00005WD domain containing protein. (291 aa)
35.t00002TFIIH basal transcription factor complex subunit, putative. (363 aa)
9.t00022Nuclear transport factor 2, putative. (126 aa)
300.t00001DNA primase; Belongs to the eukaryotic-type primase small subunit family. (380 aa)
300.t00004COP9 signalosome complex subunit 3, putative. (389 aa)
85.t00004WD domain containing protein. (392 aa)
12.t00018Cell cycle control protein cwf12, putative. (176 aa)
12.t00016Transcription initiation factor SPT5, putative. (774 aa)
11.t00003Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (595 aa)
465.t00006Cell cycle control protein cwf2, putative. (355 aa)
117.t00040DNA excision repair protein, putative. (238 aa)
117.t00023Uncharacterized protein. (988 aa)
117.t00032WD domain containing protein. (400 aa)
117.t000383' exoribonuclease family protein. (227 aa)
48.t00017Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (89 aa)
200.t00008RNA polymerase subunit Rpb5, putative. (204 aa)
18.t00015U3 small nucleolar ribonucleoprotein subunit, putative. (345 aa)
207.t00012DNA mismatch repair protein PMS1, putative. (876 aa)
6.t00018Helicase, putative. (675 aa)
32.t00015Uncharacterized protein. (199 aa)
194.t00015Splicing factor3B subunit 2, putative. (207 aa)
39.t00016BP28CT domain-containing protein. (2005 aa)
230.t00015Splicing factor, putative. (231 aa)
39.t00053Transcription initiation factor TFIID subunit 5, putative. (360 aa)
129.t00030DNA primase large subunit, putative. (457 aa)
159.t00020Uncharacterized protein. (622 aa)
88.t00008Cyclin C, putative. (255 aa)
155.t00005Ran-binding protein, putative. (973 aa)
14.t00016Uncharacterized protein. (496 aa)
14.t00019Uncharacterized protein. (576 aa)
14.t00046Splicing factor, putative. (159 aa)
14.t00054Pre-mRNA-splicing factor, putative. (176 aa)
77.t00020U2 snRNP auxiliary factor large subunit, putative. (712 aa)
77.t00019Microfibril-associated protein, putative. (242 aa)
27.t00035DNA-directed RNA polymerase II subunit, putative. (180 aa)
9.t00070Uncharacterized protein. (699 aa)
406.t00005Topoisomerase, putative. (400 aa)
169.t00023RNA polymerases II subunit, putative. (112 aa)
17.t00040SUMO-activating enzyme subunit; Belongs to the ubiquitin-activating E1 family. (494 aa)
402.t00001CDC73_C domain-containing protein. (218 aa)
55.t00023ATP/GTP-binding protein, putative. (429 aa)
3.t00048Cell cycle control protein, putative. (552 aa)
taf1Bromodomain protein, putative. (1163 aa)
3.t00022Pre-mRNA splicing factor, putative. (870 aa)
261.t00007Uncharacterized protein. (517 aa)
62.t00030Negative cofactor 2-beta. (156 aa)
62.t00017WD domain containing protein. (341 aa)
43.t00022Ran binding protein, putative. (1044 aa)
18.t00059Splicing factor 3a subunit 2, putative. (218 aa)
18.t00052Uncharacterized protein. (497 aa)
18.t00025Checkpoint protein; Belongs to the HUS1 family. (260 aa)
47.t00002Uncharacterized protein. (150 aa)
47.t00024Dr1-associated corepressor, putative. (119 aa)
47.t00026Ran-binding protein, putative. (1042 aa)
415.t00007Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (125 aa)
106.t00006PRP38 family protein. (190 aa)
91.t00006Myb-like DNA-binding domain containing protein. (238 aa)
91.t00007Uncharacterized protein. (174 aa)
91.t00009Exosome complex exonuclease, putative. (265 aa)
64.t00021Uncharacterized protein. (411 aa)
86.t00015PCI domain containing protein. (429 aa)
7.t00016DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (143 aa)
7.t00018Splicing factor 3A subunit 3, putative. (460 aa)
46.t00052H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (181 aa)
83.t00014Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family. (260 aa)
10.t00012POP4 domain-containing protein. (237 aa)
201.t00018Exosome component 10, putative. (517 aa)
201.t00013DEAD/DEAH box helicase, putative; Belongs to the DEAD box helicase family. (585 aa)
203.t00019Uncharacterized protein. (233 aa)
203.t00012Ubiquitin-activating enzyme, putative. (287 aa)
70.t00019U3 small nucleolar ribonucleoprotein protein IMP4, putative. (273 aa)
178.t00011Uncharacterized protein. (549 aa)
178.t00012Uncharacterized protein. (536 aa)
53.t00034DNA polymerase. (1077 aa)
180.t00010Uncharacterized protein. (440 aa)
368.t00004Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (545 aa)
4.t00129DNA primase; Belongs to the eukaryotic-type primase small subunit family. (372 aa)
153.t00017Uncharacterized protein. (294 aa)
153.t00011Uncharacterized protein. (133 aa)
153.t00021WD domain containing protein. (377 aa)
153.t00005Zinc finger domain containing protein. (87 aa)
224.t00013Uncharacterized protein. (371 aa)
68.t00035Uncharacterized protein. (120 aa)
75.t000363' exoribonuclease family protein. (265 aa)
75.t00014Small nuclear ribonucleoprotein F, putative. (83 aa)
19.t00055RNA recognition motif domain containing protein. (112 aa)
19.t00042F-box/WD domain containing protein. (631 aa)
77.t00007WD domain containing protein. (460 aa)
7.t00062General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (484 aa)
69.t00024U2 snRNP auxiliary factor, putative. (251 aa)
1.t00023Uncharacterized protein. (201 aa)
34.t00014Structural maintenance of chromosomes protein. (1201 aa)
22.t00011EF-hand calcium-binding domain containing protein. (261 aa)
177.t00022Uncharacterized protein. (123 aa)
33.t00006Cleavage and polyadenylation specificity factor 73 kDa subunit, putative. (755 aa)
33.t00007Proteasome regulatory subunit, putative. (448 aa)
33.t00032Uncharacterized protein. (321 aa)
198.t00006RNA-binding protein, putative. (255 aa)
144.t00004WD domain containing protein. (426 aa)
144.t000063' exoribonuclease family protein. (238 aa)
144.t00012RuvB-like helicase; Belongs to the RuvB family. (439 aa)
133.t00016Uncharacterized protein. (466 aa)
102.t00005Uncharacterized protein. (1241 aa)
40.t00030Nuclear transcription factor, putative. (212 aa)
40.t00021Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (255 aa)
40.t00010DNA repair helicase, putative. (589 aa)
94.t00035Ribonuclease P protein subunit p30, putative. (238 aa)
448.t00002Cleavage and polyadenylation specificity factor subunit, putative. (1150 aa)
5.t00083DEAD/DEAH box helicase, putative; Belongs to the DEAD box helicase family. (384 aa)
208.t00013Crooked neck protein, putative. (473 aa)
41.t00010DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1122 aa)
310.t00009DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1570 aa)
128.t00016Chromatin-specific transcription elongation factor, putative. (806 aa)
60.t00026WD domain containing protein. (281 aa)
256.t00007Exosome complex exonuclease RRP4, putative. (263 aa)
74.t00043Small nuclear ribonucleoprotein Sm D3. (111 aa)
74.t00033Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. (605 aa)
409.t00001Ran GTPase-activating protein, putative. (169 aa)
206.t00006DEAD/DEAH box helicase, putative. (757 aa)
72.t00035Uncharacterized protein. (241 aa)
326.t00002Mediator of RNA polymerase II transcription subunit 31; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (135 aa)
108.t00016Splicing factor 3b subunit 3, putative. (1108 aa)
100.t00007Structure-specific endonuclease subunit SLX1 homolog; Catalytic subunit of a heterodimeric structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA; Belongs to the SLX1 family. (308 aa)
100.t00020U2 auxiliary factor, putative. (227 aa)
243.t00007Small nuclear ribonucleoprotein G. (81 aa)
154.t00023Mago nashi protein, putative. (154 aa)
154.t00014Uncharacterized protein. (212 aa)
191.t00020Nuclear transcription factor, putative. (150 aa)
82.t00003Uncharacterized protein. (168 aa)
139.t00016MutS family protein. (934 aa)
134.t00021RNA-binding protein, putative. (309 aa)
110.t00019Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family. (921 aa)
110.t00023FHA domain protein, putative. (180 aa)
137.t00010PCI domain containing protein. (314 aa)
162.t00003DNA-directed RNA polymerase II subunit, putative. (283 aa)
250.t00013H/ACA ribonucleoprotein complex subunit 2-like protein, putative. (139 aa)
90.t00020WD domain containing protein. (884 aa)
59.t00008DNA repair protein RAD51C, putative. (283 aa)
59.t00015DNA-directed RNA polymerase subunit N, putative. (73 aa)
59.t00037Helicase, putative. (845 aa)
146.t00025DNA mismatch repair protein MLH1, putative. (702 aa)
108.t00021Nuclear complex protein 4, putative. (333 aa)
113.t00017DNA replication complex GINS protein PSF1, putative. (189 aa)
113.t00005TFIID subunit, putative. (174 aa)
73.t00023DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1379 aa)
135.t00015Uncharacterized protein. (109 aa)
145.t00010FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (376 aa)
145.t00002Glutamic acid-rich protein, putative. (1017 aa)
217.t00016TPR repeat protein. (922 aa)
51.t00022Uncharacterized protein. (670 aa)
51.t00023Mucin-2, putative. (551 aa)
89.t00010Small nuclear ribonucleoprotein F, putative. (205 aa)
89.t00016Splicing factor Prp8, putative. (2270 aa)
51.t00007DNA primase large subunit, putative. (523 aa)
51.t00011Pre-mRNA splicing factor, putative. (453 aa)
136.t00023Sister chromatid cohesion protein. (1157 aa)
51.t00031DNA-directed RNA polymerases I, II, and III 23 kDa, putative. (122 aa)
336.t00001Helicase, putative. (953 aa)
167.t00017CCAAT-binding transcription factor, putative. (185 aa)
171.t00022RNA-dependent RNA polymerase. (1026 aa)
193.t00008Cleavage and polyadenylation specificity factor subunit 2. (514 aa)
452.t00002Meiotic check point regulator, putative. (803 aa)
56.t00027Nuclear pore protein, putative. (1701 aa)
39.t00057RRM domain-containing protein. (84 aa)
226.t00010Zinc finger protein, putative. (171 aa)
45.t00005SKIP/SNW domain protein. (308 aa)
45.t00008Uncharacterized protein. (634 aa)
484.t00001WD domain containing protein. (696 aa)
186.t00016Uncharacterized protein. (980 aa)
30.t00018AAA_11 domain-containing protein. (707 aa)
8.t00008U5 small nuclear ribonucleoprotein subunit, putative. (954 aa)
211.t00005RuvB-like helicase; Belongs to the RuvB family. (449 aa)
170.t00021Uncharacterized protein. (666 aa)
170.t00025Protein kinase domain containing protein; Belongs to the protein kinase superfamily. (394 aa)
170.t00019Small nuclear ribonucleoprotein Sm D2. (101 aa)
286.t00007Uncharacterized protein. (993 aa)
254.t00012Centromere/microtubule binding protein cbf5, putative. (484 aa)
197.t00012DNA repair helicase, putative. (770 aa)
290.t00003Mre11, putative. (223 aa)
59.t00026Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (130 aa)
59.t00027DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (107 aa)
297.t00005DNA repair helicase, putative. (788 aa)
180.t000143' exoribonuclease family protein. (223 aa)
333.t00005Uncharacterized protein. (200 aa)
392.t00003LSM domain containing protein. (91 aa)
54.t00046Uncharacterized protein. (256 aa)
370.t00004Uncharacterized protein. (338 aa)
222.t00013TFIID subunit, putative. (433 aa)
222.t00004Uncharacterized protein. (263 aa)
4.t00062Zinc finger protein, putative. (178 aa)
9.t00076Nucleolar complex protein 2 homolog, putative. (508 aa)
90.t00002WD domain containing protein. (323 aa)
113.t00021DNA mismatch repair protein Msh2, putative. (630 aa)
161.t00010Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (262 aa)
344.t00001DNA-directed RNA polymerase II subunit, putative. (137 aa)
165.t00012Splicing factor subunit; Belongs to the SF3B5 family. (100 aa)
292.t00013Uncharacterized protein. (946 aa)
188.t00013Ribonuclease P protein subunit p30, putative. (236 aa)
188.t00019Nuclear pore protein, putative. (350 aa)
41.t00030Ribosome biogenesis protein Nop10, putative. (59 aa)
136.t00018Splicing factor 3B subunit 3, putative. (1145 aa)
281.t00001DNA repair helicase, putative. (648 aa)
404.t00004Uncharacterized protein; Belongs to the cyclin family. (246 aa)
121.t00002DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1106 aa)
902.t00001Splicing factor 3B subunit 1, putative. (914 aa)
373.t00007Uncharacterized protein. (394 aa)
346.t00005Exosome complex exonuclease, putative; Belongs to the RNR ribonuclease family. (901 aa)
72.t00027Protein kinase, putative; Belongs to the protein kinase superfamily. (335 aa)
13.t00007U2 snRNP auxiliary factor small subunit, putative. (279 aa)
14.t00057Uncharacterized protein. (194 aa)
562.t00001DNA replication complex GINS protein SLD5; The GINS complex plays an essential role in the initiation of DNA replication; Belongs to the GINS4/SLD5 family. (204 aa)
279.t00017Uncharacterized protein. (151 aa)
436.t00002Topoisomerase, putative. (365 aa)
217.t00008Cell division protein kinase, putative. (268 aa)
TBPTATA-box-binding protein 1; General transcription factor that functions at the core of the DNA-binding multiprotein factor TFIID. Binding of TFIID to the TATA box is the initial transcriptional step of the pre-initiation complex (PIC), playing a role in the activation of eukaryotic genes transcribed by RNA polymerase II. (234 aa)
264.t00015Sec 13 protein, putative; Belongs to the WD repeat SEC13 family. (261 aa)
60.t00011Acetyltransferase, GNAT family. (247 aa)
48.t00008Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (414 aa)
RPB1DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1636 aa)
CFIm25Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (236 aa)
fus6COP9 signalosome complex subunit 1, putative. (392 aa)
Your Current Organism:
Entamoeba histolytica
NCBI taxonomy Id: 5759
Other names: E. histolytica
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